View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21205_low_73 (Length: 241)
Name: NF21205_low_73
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_73 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 1495144 - 1494920
Alignment:
| Q |
3 |
gtattttcaaactttatcttttttcaacctgggacttgagtttttccaatgatcccaatatttaatatcgtaaatattatggccaaatacagctaatatg |
102 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1495144 |
gtattttcaaagtttatctcttttcaacgtgggacttgagtttttccaatgatcgcaatatttaatatcgtaaatattattgccaaatacagctaatatg |
1495045 |
T |
|
| Q |
103 |
tagctagctacaattgcattcgcagaaacatgaaaaaccttgatttaaaggagaaatggtttgatattttgattaccgcaatcataaggccaacttcaac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1495044 |
tagctagctacaattgcattcgcagaaacatgaaaaaccttgatttaaaggagaaatggtttgatattttgattaccgcaatcacaaggccaacttcaac |
1494945 |
T |
|
| Q |
203 |
acttttgaagatgacaccaaagaag |
227 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1494944 |
acttttgaagatgacaccaaagaag |
1494920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University