View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21205_low_80 (Length: 238)
Name: NF21205_low_80
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_80 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 47902034 - 47901805
Alignment:
| Q |
1 |
caaatttgactggaattacaatcaccacattcttttatgcattatgtggtcttgtaggatatgcagcatttggaaataaagcaccaggaaactttttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47902034 |
caaatttgactggaattacaatcaccacattcttttatgcattatgtggtcttgtaggatatgcagcatttggaaacaaagcaccaggaaactttttaac |
47901935 |
T |
|
| Q |
101 |
tggatttggtttttatgaaccattctggcttgttgatattggtaatcttttcatcgttattcacttagtgggagcctaccaggtagttagtaattttata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47901934 |
tggatttggtttttatgaaccattctggcttgttgatattggtaatcttttcatcgttattcacttagtgggagcctaccaggtagttagtaattttata |
47901835 |
T |
|
| Q |
201 |
aaccaaagttactaaatgaatgaatatatt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
47901834 |
aaccaaagttactaaatgaatgaatatatt |
47901805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 47908266 - 47908086
Alignment:
| Q |
20 |
aatcaccacattcttttatgcattatgtggtcttgtaggatatgcagcatttggaaataaagcaccaggaaactttttaactggatttggtttttatgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||| ||||||||| || || |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
47908266 |
aatcaccacattcttttatgcattatgtggtcttctaggttatgaagcatttgggaacaaggcaccaggaaacttcttaaccggatttggtttttatgaa |
47908167 |
T |
|
| Q |
120 |
ccattctggcttgttgatattggtaatcttttcatcgttattcacttagtgggagcctaccaggtagttagtaattttata |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
47908166 |
ccattctggctcgttgatattggtaatcttttcatcattattcatctagtaggagcctaccaggtaattagttattttata |
47908086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 47916720 - 47916546
Alignment:
| Q |
11 |
tggaattacaatcaccacattcttttatgcattatgtggtcttgtaggatatgcagcatttggaaataaagcaccaggaaactttttaactggatttggt |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
47916720 |
tggaattataatcaccacattcttttatgcattatgtggtcttttaggctatgcagcatttggaaacaaggcaccaggaaactttttaactggatttggt |
47916621 |
T |
|
| Q |
111 |
ttttatgaaccattctggcttgttgatattggtaatcttttcatcgttattcacttagtgggagcctaccaggta |
185 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||||||||||| ||| | ||||| |||| ||||||||||||||| |
|
|
| T |
47916620 |
ttttacgaaccatattggcttgttgacattggtaatctttttatcatcattcatctagtcggagcctaccaggta |
47916546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 47923146 - 47922972
Alignment:
| Q |
11 |
tggaattacaatcaccacattcttttatgcattatgtggtcttgtaggatatgcagcatttggaaataaagcaccaggaaactttttaactggatttggt |
110 |
Q |
| |
|
|||||| ||||| | |||| |||||||| |||||||||||||| |||| |||| ||| || || || || ||||| |||||||| ||||||||||||||| |
|
|
| T |
47923146 |
tggaatcacaataagcacaatcttttattcattatgtggtcttttaggctatggagccttcgggaacaaggcaccgggaaacttcttaactggatttggt |
47923047 |
T |
|
| Q |
111 |
ttttatgaaccattctggcttgttgatattggtaatcttttcatcgttattcacttagtgggagcctaccaggta |
185 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| || ||||||||| |
|
|
| T |
47923046 |
ttttatgaaccatattggcttgttgatattggtaatcttttcatcattattcatctagtgggcgcttaccaggta |
47922972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University