View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_81 (Length: 238)
Name: NF21205_low_81
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 53866792 - 53866572
Alignment:
| Q |
1 |
ctggtctaataaagaaataaagaacaaaatatacacaaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagat |
100 |
Q |
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| T |
53866792 |
ctggtctaataaagaaataaagaacaaaatatacacaaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagat |
53866693 |
T |
|
| Q |
101 |
gatcagcaagtttgatatcatcattatatccaaaccttttaagcatagtccatggtatctcacgaaacaaaattttcatgaaatcagcatggagagattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53866692 |
gatcagcaagtttgatatcatcattatatccaaaccttttaagcatagtccatggtatctcacgaaacaaaattttcatgaaatcagcatggagagattg |
53866593 |
T |
|
| Q |
201 |
aaatcctgtgaaagtaagtcc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
53866592 |
aaatcctgtgaaagtaagtcc |
53866572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 54160519 - 54160723
Alignment:
| Q |
15 |
aaataaagaacaaaatatacacaaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttg |
114 |
Q |
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| T |
54160519 |
aaatacagaacacaatacaaacaaggccacaatttgtataaaaaaaaac--ctgatcgggagcacgtgtcagaggcggaattagatgatcagcaagtctg |
54160616 |
T |
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| Q |
115 |
atatcatcattatatccaaaccttttaagcatagtccatggtatctcacgaaacaaaattttcatgaaatcagcatggagagattgaaatcctgtgaaag |
214 |
Q |
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| T |
54160617 |
atatcatccatatacccaaactttcttagcatagcccacggtacctcccggtgccatattttcttgaaatcagcgtgtaaagattgaaatcctgctaaag |
54160716 |
T |
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| Q |
215 |
taagtcc |
221 |
Q |
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||||||| |
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| T |
54160717 |
taagtcc |
54160723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 17882600 - 17882712
Alignment:
| Q |
42 |
cacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaacctttta |
141 |
Q |
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|||| ||||| |||||||||||||||||||||| |||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||| | |
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| T |
17882600 |
cacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctg |
17882699 |
T |
|
| Q |
142 |
agcatagtccatg |
154 |
Q |
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|||| |||||||| |
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| T |
17882700 |
agcacagtccatg |
17882712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 14775222 - 14775320
Alignment:
| Q |
37 |
aaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaac |
135 |
Q |
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|||| |||| ||||| | |||||||||||||||||||| |||||||||||| ||||| | || ||||||||| |||||||||||||||||||||||| |
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| T |
14775222 |
aaggtcacaattcatctgaaaagaaacacctgatcaggtgcacgtttcaaaggtggaatcaaattatcagcaagcttgatatcatcattatatccaaac |
14775320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 15017292 - 15017406
Alignment:
| Q |
40 |
gccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaaccttt |
139 |
Q |
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|||||| || || |||||||||||||||||||||| ||| | |||||| ||||| || || | ||||||| |||| ||||| ||||||||||||| ||| |
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| T |
15017292 |
gccacaatttatctcaaaagaaacacctgatcaggtgcaagcttcaaaggcggaaataaatcagcagcaagcttgacatcataattatatccaaactttt |
15017391 |
T |
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| Q |
140 |
taagcatagtccatg |
154 |
Q |
| |
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| |||| |||||||| |
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| T |
15017392 |
ttagcacagtccatg |
15017406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 15050063 - 15050156
Alignment:
| Q |
40 |
gccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaac |
135 |
Q |
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|||||| || || |||||||||| ||||||||||| || |||||||| |||| || || ||||| ||| |||||||||| ||||||||||||| |
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| T |
15050063 |
gccacaatttatctcaaaagaaagacctgatcaggtgc--gtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaac |
15050156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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