View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_84 (Length: 232)
Name: NF21205_low_84
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 33302475 - 33302693
Alignment:
| Q |
1 |
tttgagtatgatgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33302475 |
tttgagtatgatgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtattt |
33302574 |
T |
|
| Q |
101 |
atatttgtgaacatttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccatccatgatcacatctcgccctttgtttagagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33302575 |
atatttgtgaacatttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccgtccatgatcacatctcgccctttgtttagagcc |
33302674 |
T |
|
| Q |
201 |
gtcacaagtacagatgatg |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
33302675 |
gtcacaagtacagatgatg |
33302693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 33250572 - 33250782
Alignment:
| Q |
9 |
tgatgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtacttatatttgt |
108 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || | |||| ||||| |||||||||||||||| ||||| |
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| T |
33250572 |
tgatgttcttctccctcattcacttgctcccagtaattttcattaattgtaccatccgcagctactttatatcctacccccattctgtacttatgtttgt |
33250671 |
T |
|
| Q |
109 |
gaacatttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccatccatgatcacatctcgccctttgtttagagccgtcacaag |
208 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| || |
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| T |
33250672 |
gaacatttcttgccatagcaatagtctgctccacaaaaggttcccatgataaggtaccgtccataatcacatctcgccctttgtttagagccgccactag |
33250771 |
T |
|
| Q |
209 |
tacagatgatg |
219 |
Q |
| |
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|| |||||||| |
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|
| T |
33250772 |
tagagatgatg |
33250782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 33270744 - 33270954
Alignment:
| Q |
9 |
tgatgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtacttatatttgt |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || | |||| ||||| |||||||||||||||| ||||| |
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| T |
33270744 |
tgatgttcttctccctcattcacttgctcccagtaattttcattaattgtaccatccgcagctactttatatcctacccccattctgtacttatgtttgt |
33270843 |
T |
|
| Q |
109 |
gaacatttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccatccatgatcacatctcgccctttgtttagagccgtcacaag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| || |
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| T |
33270844 |
gaacatttcttgccatagcaatagtctgctccacaaaaggttcccatgataaggtaccgtccataatcacatctcgccctttgtttagagccgccactag |
33270943 |
T |
|
| Q |
209 |
tacagatgatg |
219 |
Q |
| |
|
|| |||||||| |
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|
| T |
33270944 |
tagagatgatg |
33270954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 33310472 - 33310679
Alignment:
| Q |
12 |
tgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtacttatatttgtgaa |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| | | || |||||| ||| ||||||| ||| |||||||||||| |
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|
| T |
33310472 |
tgttcttctgcttcattcacttgctcccaataattttcggttattgtcccatctttagcttctctatatcctggccccattcgatacctatatttgtgaa |
33310571 |
T |
|
| Q |
112 |
catttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccatccatgatcacatctcgccctttgtttagagccgtcacaagtac |
211 |
Q |
| |
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||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||| || || |||||||| ||||| || | |
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| T |
33310572 |
tatttcttgccatagctatagtttgctctacaaaaggttcccatgataaggtaccatccatgaccacatctcgtcccttatttagagctgtcactagcag |
33310671 |
T |
|
| Q |
212 |
agatgatg |
219 |
Q |
| |
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|||||||| |
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|
| T |
33310672 |
agatgatg |
33310679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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