View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_86 (Length: 228)
Name: NF21205_low_86
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_86 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 36396991 - 36397160
Alignment:
| Q |
46 |
gtcttgaggacctaagttcatgtatattttttccctgtgggagaaaggcacgatgatacagcattggttaatttgttatgctttgttatacatatgcaat |
145 |
Q |
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| T |
36396991 |
gtcttgaggacctaagttcatgtatattttttccctgtgggagaaaggcacgatgatacagcattagttaatttgttatgctttgttatacatatgcaat |
36397090 |
T |
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| Q |
146 |
catgtaattataatggattttgtttgtgtttgttcatatgtagtgat-aaaagaacttgattgtttttga |
214 |
Q |
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| T |
36397091 |
catgtaattataatggatttcgtttgtgtttgttcatatgcagtgataaaaagaacttgattgtttttga |
36397160 |
T |
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Back To:
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Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 8455256 - 8455143
Alignment:
| Q |
52 |
aggacctaagttcatgtatattttttccctgtgggagaaaggcacgatgatacagcattggttaatttgttatgctttgttatacatatgcaatcatgta |
151 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
8455256 |
aggacctaagttcatgtatattttttccctgtggaagaaaggcacgatgatacagcattagttaatttgttttgctttgttatacatatgcaatcatgta |
8455157 |
T |
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| Q |
152 |
attataatggattt |
165 |
Q |
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| T |
8455156 |
attataatggattt |
8455143 |
T |
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