View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_88 (Length: 211)
Name: NF21205_low_88
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 51406853 - 51406668
Alignment:
| Q |
14 |
aggccactattgacagactatagtaatcactgtaacattaattaattacttataggttaagttatctttcgtatttgagcatcacactgtgtttgcgaag |
113 |
Q |
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| T |
51406853 |
aggccactattgacagactatagtaatcactgtaacattaattaattacttataggttaagttatctttcgtatttgagcatcacactgtgtttgcgaag |
51406754 |
T |
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| Q |
114 |
gaaagtctttaaagatcaatttttctatctcctttgctctctccatatgttgttatccttaacaattttggccaaacattatctgt |
199 |
Q |
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| T |
51406753 |
gaaagtctttaaagatcaatttttctatctcctttgctctctccatatgttgttatccttaacaattttggccaaacattatctgt |
51406668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 51378956 - 51378850
Alignment:
| Q |
68 |
ggttaagttatctttcgtatttgagcatcacactgtgtttgcgaaggaaagtctttaaagatcaatttttctatctcctttgctctctccatatgttgtt |
167 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
51378956 |
ggttaagttgtctttcgtatttgagcatcacactgtgtttgcgaaggaaagtctttaaagatcaatttttctatctcctttgctctctcaatatgttatt |
51378857 |
T |
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| Q |
168 |
atcctta |
174 |
Q |
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| T |
51378856 |
accctta |
51378850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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