View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_89 (Length: 201)
Name: NF21205_low_89
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_89 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 9526345 - 9526545
Alignment:
| Q |
1 |
ctcaagtcaacaaggtcacctttgttaccaactagcatgatcacaattgagttatctgcatgtgctctaagttcctcaacccatttagcaacatgatcaa |
100 |
Q |
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| T |
9526345 |
ctcaaatcaacaaggtcacctttgttaccaactagcatgatcacaattgagttatctgcatgtgctctaagttcctcaacccatttagcaacatgatcaa |
9526444 |
T |
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| Q |
101 |
atgattgtcttttggttatgtcatatactagcatggctcctaatgcacctctatagtatgcacttgtaacagccctgtacctatatcagcaacaaaattt |
200 |
Q |
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| T |
9526445 |
aagattgccttttggttatgtcatatactagcattgctcctaatgcacctctatagtatgcacttgttacagctctgtacctatatcaacaacataattt |
9526544 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
9526545 |
a |
9526545 |
T |
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Target: chr7 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 48932348 - 48932172
Alignment:
| Q |
10 |
acaaggtcacctttgttaccaactagcatgatcacaattgagttatctgcatgtgctctaagttcctcaacccatttagcaacatgatcaaatgattgtc |
109 |
Q |
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| T |
48932348 |
acaagatcacctttgttaccaattagcatgatcacgatggagttgtcggcgtgtgaccgtagttcctcaatccatctagctacatgatcaaacgtttgtc |
48932249 |
T |
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| Q |
110 |
ttttggttatgtcatatactagcatggctcctaatgcacctctatagtatgcacttgtaacagccctgtacctatat |
186 |
Q |
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| T |
48932248 |
ttttagttatgtcatacaccagcatggcccctaatgctcctctgtagtatgcacttgtaaccgctctgtacctatat |
48932172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 14479 - 14388
Alignment:
| Q |
94 |
tgatcaaatgattgtcttttggttatgtcatatactagcatggctcctaatgcacctctatagtatgcacttgtaacagccctgtacctata |
185 |
Q |
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| T |
14479 |
tgatcgaatgattgacgttttgtcatgtcgtaaactaacattgccccaactgcacctcgatagtatgcactagtaactgccctgtacctata |
14388 |
T |
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