View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_9 (Length: 602)
Name: NF21205_low_9
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Original strand, 19571287 - 19571864
Alignment:
| Q |
11 |
cataggacctgtatcaccataatttgattattgtcaagttatttttcaagagataacttcaaatcagattccaagtttgcagagatgcacgtttttctgg |
110 |
Q |
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| T |
19571287 |
cataggacctgtatcaccataatttgattattgtcaagttttttttcaagagataacttcaaatcagattccaagtttgcagagatgcacgtttttctgg |
19571386 |
T |
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| Q |
111 |
ttaaaaccatacaatagtgataagtaagaatctgaagtgttgcatgagagaacatatgatcctcaagtgtccaatgaatttgtttaatttcatgctatgt |
210 |
Q |
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| T |
19571387 |
ttaaaaccatacaatagtgataagtaagaatctgaagtgttgcatgagagaacatatgatcctcaagtgtccaatgaatttgtttaatttcatgctatgt |
19571486 |
T |
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| Q |
211 |
agggaaaaaatgaaacttgagtcaaatcatagttatctgtactccaacttatatactagggcatattttagtctataaagcctatatgtaagaacnnnnn |
310 |
Q |
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| T |
19571487 |
agggaaaaaatgaaacttgagtcaaatcatagttatctgtactccaacttatatactagggcatattttagtctataaagcctatatgtaagaacaaaaa |
19571586 |
T |
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| Q |
311 |
nntatgtaagttagaccgtatcatgtaagaaaagtggattgtacgtcatgagttaagtatttagatattgatacatacataaatataaaatatttagaaa |
410 |
Q |
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| T |
19571587 |
aatatgtgagttagaccgtatcatgtaagaaaagtggattgtacgtcatgagttaagtatttagatattgatatatacataaatataaaatatctagaaa |
19571686 |
T |
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| Q |
411 |
ttggaggtgtaaaaagcgtgttttagtgtgtattcagacttgaggtgagtttaacaaaatcacgatgcacgactatggtttagataaattcaccacaatt |
510 |
Q |
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| T |
19571687 |
ttggaggtgtaaaaagtgtgttttagtgtgtattcagatttgaggtgagtttaacaaaatcacgatgcacgactatggtttagataaattcaccacaatt |
19571786 |
T |
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| Q |
511 |
ttaacataggtttagtctagagctctaggcatagtgttatcaatgaattccgtttcgcgcaaatgtgcgttagttatg |
588 |
Q |
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| T |
19571787 |
ttaacataggtttagtctagagctctaggcatagtgttatcaatgaattcggtttcacgcaaatgtgcgttagttatg |
19571864 |
T |
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