View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21206_high_1 (Length: 547)
Name: NF21206_high_1
Description: NF21206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21206_high_1 |
 | |
|
| [»] scaffold0864 (1 HSPs) |
| | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 479; Significance: 0; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 45 - 531
Target Start/End: Original strand, 5692601 - 5693087
Alignment:
| Q |
45 |
attgcaaaatggggcaaagttagaggacaaaaatgttgttttattaatcgggggcaaaattataattttaacaaatttagggaaccaaaaatgagtttaa |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5692601 |
attgcaaaatggggcaaagttagaggacaaaaatgttgttttattaatcgggggcaaaattataattttaacaaatttagggaaccaaaaatgagtttaa |
5692700 |
T |
|
| Q |
145 |
gcctctgaatgattgcaatagttgaatgaaactacctgaaatttggaactacaaagccagcaagcccagcaacctcactaagcgcgtctctccatttcag |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5692701 |
gcctctgaatgattgcaatagttgaatgaaactacctgaaatttggaactacaaagccagcaagcccagcaacctcactaagcgcgtctctccatttcag |
5692800 |
T |
|
| Q |
245 |
cgacttgtctgtcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatag |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5692801 |
cgacttgtctgtcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatag |
5692900 |
T |
|
| Q |
345 |
aacaccggcaacactatctgtcctatagttctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaa |
444 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5692901 |
aacaccggcaacactatctgccctatagttctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaa |
5693000 |
T |
|
| Q |
445 |
ctataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataa |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5693001 |
ctataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctcctcttggaagtgaatcatcgtccataa |
5693087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 197 - 527
Target Start/End: Complemental strand, 5174417 - 5174087
Alignment:
| Q |
197 |
aaagccagcaagcccagcaacctcactaagcgcgtctctccatttcagcgacttgtctgtcttctttgaaattctgctcaagagactttggaacgctttt |
296 |
Q |
| |
|
||||||||||||| ||||| |||||| ||| || |||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174417 |
aaagccagcaagctcagcagcctcacgaagtgcatctctccatttcagggacgtgcttttcttctttgaaattctgctcaagagactttggaacgctttt |
5174318 |
T |
|
| Q |
297 |
ccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgtcctatagttctgcgacactccattattttaa |
396 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| | |
|
|
| T |
5174317 |
ccaaactcacctgtttggtgtcgtacatccgaaggatcaacatcatagaacaccggcaacactatctgccctatagttctgcgacatttcattattttca |
5174218 |
T |
|
| Q |
397 |
ccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaat |
496 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
5174217 |
ccaactcatccaaacaccaccgtgaatctgcatagttttttgagaaaatgataacagaaatttgagactcttcaattgcttgtagtagtgattttgaaat |
5174118 |
T |
|
| Q |
497 |
gtgatctccacttggaagtgaatcatcgtcc |
527 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |
|
|
| T |
5174117 |
gtgatctcctctttgaagtgaatcatcgtcc |
5174087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 231 - 432
Target Start/End: Complemental strand, 5276129 - 5275928
Alignment:
| Q |
231 |
tctctccatttcagcgacttgtctgtcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaag |
330 |
Q |
| |
|
|||||| ||||||| ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5276129 |
tctctcaatttcagggacgtgcttttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaag |
5276030 |
T |
|
| Q |
331 |
gatcaacatcatagaacaccggcaacactatctgtcctatagttctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcata |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||| |||||||||| | ||||||||||| |
|
|
| T |
5276029 |
gatcaacatcatagaacaccggcaacactatctgccctatagttctgcgacatttcattattttcaccaactcatccaaacaccaccatgaatctgcata |
5275930 |
T |
|
| Q |
431 |
gt |
432 |
Q |
| |
|
|| |
|
|
| T |
5275929 |
gt |
5275928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 5276264 - 5276130
Alignment:
| Q |
165 |
gttgaatgaaactacctgaaatttggaactacaaagccagcaagcccagcaacctcactaagcgcgtctctccatttcagcgacttgtctgtcttctttg |
264 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||| ||| || |||||||||||||| || || | |||||||| |
|
|
| T |
5276264 |
gttgaattaaattacctgaaatttggaactacaaagccagcaatctcagcaacctcacgaagtgcatctctccatttcagggatgtgcttttcttcttta |
5276165 |
T |
|
| Q |
265 |
aaattctgctcaagagactttggaacgcttttcca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5276164 |
aaattctgctcaagagactttggaacgcttttcca |
5276130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 177 - 529
Target Start/End: Complemental strand, 5380663 - 5380309
Alignment:
| Q |
177 |
tacctgaaatttggaactacaaagccagcaagcccagcaacctcactaagcgcgtctctccatttcagcgacttgtctgtcttcttt---gaaattctgc |
273 |
Q |
| |
|
|||||| | ||| |||||||||| ||||||| ||||| || || ||| || |||||||||||||||| ||| ||| ||||||| |||| | ||| |
|
|
| T |
5380663 |
tacctggagtttagaactacaaatccagcaaaggcagcagccccatgaagagcctctctccatttcagcgtcttatctttcttcttcttcgaaagtttgc |
5380564 |
T |
|
| Q |
274 |
tcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgtcctatagt |
373 |
Q |
| |
|
|||||||||||| || |||| |||||||||||| |||||||| ||||| || | ||||||||||||||||||||||| | |||||||||| |||| || |
|
|
| T |
5380563 |
tcaagagactttcaaaagcttgtccaaactcaccagtttggtgacgtacctccaagggatcaacatcatagaacaccggtagcactatctgtgctatggt |
5380464 |
T |
|
| Q |
374 |
tctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaattatagactcttcgatt |
473 |
Q |
| |
|
|||| |||||| |||||| || |||||||||| | |||||| ||||||||||| ||| |||| ||||| |||| ||||||| |||| | ||| ||| |
|
|
| T |
5380463 |
tctgtgacact-cattatcttcaccaactcatcaagacaccatcgtgaatctgcataatttcttgaaaaaacaataatagaaattttagaatgttcaatt |
5380365 |
T |
|
| Q |
474 |
gcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccat |
529 |
Q |
| |
|
|||| ||| |||||| ||| |||||||| ||| |||||||||| || ||||| |
|
|
| T |
5380364 |
tcttgcggtaacaatgttgaaatatgatctcctctttgaagtgaatcttcatccat |
5380309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 274 - 527
Target Start/End: Complemental strand, 5422400 - 5422147
Alignment:
| Q |
274 |
tcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgtcctatagt |
373 |
Q |
| |
|
|||| ||| |||| || ||||||||||| ||||| ||||| | ||||| || || ||||| || || |||||||||||| || || ||||| || || |
|
|
| T |
5422400 |
tcaaaagattttgaaatgcttttccaaattcaccggtttgacgacgtacttcggatggatctacgtcgaagaacaccggcagaacaatttgtccaatggt |
5422301 |
T |
|
| Q |
374 |
tctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaattatagactcttcgatt |
473 |
Q |
| |
|
|||| |||||||||||||||| | |||||||| | |||||| ||||| || || ||| ||||||||||||| | ||| ||| ||||| ||| ||| |
|
|
| T |
5422300 |
tctgtgacactccattattttcaacaactcatcaagacaccattgtgaatccgcgtaatttgttgagaaaactatgatagacattcgagactgttcaatt |
5422201 |
T |
|
| Q |
474 |
gcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtcc |
527 |
Q |
| |
|
||| |||| |||||||||| |||||||||||| ||| |||| |||||||||||| |
|
|
| T |
5422200 |
gctcgtaggagtgatgttgaaatgtgatctcctctttgaagcgaatcatcgtcc |
5422147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 260 - 523
Target Start/End: Original strand, 5149595 - 5149858
Alignment:
| Q |
260 |
ctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacact |
359 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||||| |||||||||| ||||||||| ||||| || | ||||| |||||||| ||||| ||||| || |
|
|
| T |
5149595 |
ctttgaaattctattcaagagactttgaaatgctttgccaaactcacttgtttggtgacgtacttcacatggatctacatcataaaacactggcaaaacc |
5149694 |
T |
|
| Q |
360 |
atctgtcctatagttctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaatta |
459 |
Q |
| |
|
| ||| ||| ||||| ||||| ||||||||||| |||||||| | | |||||| ||||| |||||||||| |||| ||||| || ||||| || |
|
|
| T |
5149695 |
aactgcccttgtgttctacgacaatccattattttcaccaactcttcgagacaccatcgcgaatttgcatagtttcttgaaaaaacaatcacagagatct |
5149794 |
T |
|
| Q |
460 |
tagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatc |
523 |
Q |
| |
|
||||| || ||| ||| | ||| |||||||| |||||||||||| ||| ||| |||||||| |
|
|
| T |
5149795 |
gagacttttggatagctagatgtattgatgttgaaatgtgatctcctcttttaagagaatcatc |
5149858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 476
Target Start/End: Original strand, 5107707 - 5107889
Alignment:
| Q |
294 |
tttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgtcctatagttctgcgacactccattattt |
393 |
Q |
| |
|
|||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| | ||| | ||| ||||| ||||||||||||||||||| |
|
|
| T |
5107707 |
tttccaaactcaccagtttgatgacgtacttctgagggatcaacatcatagaacaccggaagcaccacctgccctatgcttctgcgacactccattatcg |
5107806 |
T |
|
| Q |
394 |
taaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaattatagactcttcgattgct |
476 |
Q |
| |
|
| | ||||||||| | |||||| ||| | ||||| ||||||||||||| |||| ||||||| ||| ||||| |||||| |
|
|
| T |
5107807 |
tcaacaactcatttagacaccaacgcgatttcgcataattttttgagaaaatgataatagaaatttcagattcttcaattgct |
5107889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 519
Target Start/End: Original strand, 5358028 - 5358286
Alignment:
| Q |
261 |
tttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacacta |
360 |
Q |
| |
|
|||||||| || |||| |||||||| || |||||||| |||||||| ||||| | ||||| || || ||||| ||| | |||||||| ||||| || | |
|
|
| T |
5358028 |
tttgaaatccttttcaatagactttgaaatgcttttccgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacactggcaaaacaa |
5358127 |
T |
|
| Q |
361 |
tctgtcctatagttctgcgacactccattattttaaccaactcattcaa-acaccacgacgaatctgcatagttttttgagaaaactataacagaaatta |
459 |
Q |
| |
|
|| ||| | |||||||||||| |||||| | |||||||| ||||| |||||| ||| |||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
5358128 |
cttggccttgaattctgcgacacttcattatctccaccaactc-ttcaagacaccattgcgattctgcataatttgttgagaaaacgataacagaaattt |
5358226 |
T |
|
| Q |
460 |
tagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaat |
519 |
Q |
| |
|
||| |||| |||||||| | ||||||| ||| |||||||||||| ||| ||||||||| |
|
|
| T |
5358227 |
gagaatcttgaattgcttgcattagtgattttgaaatgtgatctcccctttgaagtgaat |
5358286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 469
Target Start/End: Complemental strand, 5093146 - 5092937
Alignment:
| Q |
260 |
ctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacact |
359 |
Q |
| |
|
|||||||||||| | |||||| |||| || ||||| |||||||| ||| | ||||| ||||| || || ||||| ||||| |||||||| |||| ||| |
|
|
| T |
5093146 |
ctttgaaattctatttaagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaact |
5093047 |
T |
|
| Q |
360 |
atctgtcctatagttctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaatta |
459 |
Q |
| |
|
||||| ||||| |||| ||||||||||||| || || ||||||| | |||||| |||||||||||| ||| |||| ||||| || ||||||||| |
|
|
| T |
5093046 |
atctgccctatggttcgctgacactccattatctttactaactcatctagacaccatcgcgaatctgcataatttcttgaaaaaacaatcacagaaattc |
5092947 |
T |
|
| Q |
460 |
tagactcttc |
469 |
Q |
| |
|
||||||||| |
|
|
| T |
5092946 |
gagactcttc |
5092937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 527
Target Start/End: Complemental strand, 5273054 - 5272954
Alignment:
| Q |
427 |
catagttttttgagaaaactataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtc |
526 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| ||| |||||| ||||||||||| ||| |||||||||||| ||| ||||| |||||| ||| |
|
|
| T |
5273054 |
catagttttttgagaaaatgataacagaaatttgagacctttcaattgctagtagtagtgattttgaaatgtgatctcctctttgaagtaaatcattgtc |
5272955 |
T |
|
| Q |
527 |
c |
527 |
Q |
| |
|
| |
|
|
| T |
5272954 |
c |
5272954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 260 - 527
Target Start/End: Original strand, 5160391 - 5160658
Alignment:
| Q |
260 |
ctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacact |
359 |
Q |
| |
|
|||||||||||| | |||||| |||| || ||||| ||||||| ||| | ||||| ||||| || || ||||| ||||| |||||||| ||||| ||| |
|
|
| T |
5160391 |
ctttgaaattctatttaagagattttgaaatgctttaccaaacttgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcaaaact |
5160490 |
T |
|
| Q |
360 |
atctgtcctatagttctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaatta |
459 |
Q |
| |
|
||||| ||||| ||| |||||||||||| || || |||||||| | |||||| |||||| ||||| ||| |||| ||||| || ||||||||| |
|
|
| T |
5160491 |
atctgccctatggttagctgacactccattacctttactaactcatttagacaccatcgcgaatccgcataatttcttgaaaaaacaatcacagaaattc |
5160590 |
T |
|
| Q |
460 |
tagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtcc |
527 |
Q |
| |
|
||| ||||| || | || |||| |||||||| || |||||||| ||| ||| |||||||||||| |
|
|
| T |
5160591 |
gagattcttcaatcgaatgaagtaatgatgttggtatttgatctcctctttcaagagaatcatcgtcc |
5160658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 526
Target Start/End: Complemental strand, 5340758 - 5340499
Alignment:
| Q |
267 |
attctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgtc |
366 |
Q |
| |
|
|||||| |||| ||| |||| || |||||||||||||| |||||||| || |||| ||||| ||||||||||| ||||| | ||| | || | |||| |
|
|
| T |
5340758 |
attctgttcaaaagattttgaaatgcttttccaaactctcctgtttgatgacgtatttctgagggatcaacatcgtagaatatcggtagaacaacttgtc |
5340659 |
T |
|
| Q |
367 |
ctatagttctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaattatagactc |
466 |
Q |
| |
|
|| ||||||||||||| | ||||||| | ||||| |||| || |||||| ||||| | ||| || | |||||||| || ||||||||| || |
|
|
| T |
5340658 |
ctgtagttctgcgacatttcattattctcaccaattcatccagacaccattttgaatcggaataattgctcgagaaaacaatcacagaaatttgagttag |
5340559 |
T |
|
| Q |
467 |
ttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtc |
526 |
Q |
| |
|
||| |||| | ||||||||||||||| ||| ||||| || ||| |||| ||||||||||| |
|
|
| T |
5340558 |
ttcaattgttcgtagtagtgatgttgaaatttgatcacctctttgaagcgaatcatcgtc |
5340499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 529
Target Start/End: Original strand, 5137715 - 5137762
Alignment:
| Q |
482 |
tagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccat |
529 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
5137715 |
tagtgatgttgaaatgtgatctcctctttgaagtgaatcatcgtccat |
5137762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 514
Target Start/End: Original strand, 5264313 - 5264395
Alignment:
| Q |
432 |
ttttttgagaaaactataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaag |
514 |
Q |
| |
|
|||||||||||||| || | ||||||| | |||||||| ||||| ||| || |||||||| |||||||||||| ||| |||| |
|
|
| T |
5264313 |
ttttttgagaaaacaattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctctttgaag |
5264395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 476
Target Start/End: Original strand, 5077080 - 5077192
Alignment:
| Q |
364 |
gtcctatagttctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaattataga |
463 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |||||||||| ||| | ||||| ||| |||| |||||||||| | |||| |||| |
|
|
| T |
5077080 |
gtcctatagttctataacactccattattttctccaactctatcaaacaccatcgcgatcccgcataatttcttgaaaaaactataataacaattctaga |
5077179 |
T |
|
| Q |
464 |
ctcttcgattgct |
476 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
5077180 |
ctcttcaattgct |
5077192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 458
Target Start/End: Complemental strand, 5444189 - 5444117
Alignment:
| Q |
386 |
cattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaatt |
458 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||| ||||| |||||||| ||||| || | ||||||| |
|
|
| T |
5444189 |
cattattttcaccaattcattcaaacaccatcgcgaatcagcataattttttgaaaaaacaattatagaaatt |
5444117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 264 - 483
Target Start/End: Complemental strand, 4356956 - 4356737
Alignment:
| Q |
264 |
gaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatct |
363 |
Q |
| |
|
||||||||| |||| ||| |||| || | ||| ||||| ||||| ||||| | || || || ||||| ||||||||||||||||| |||| || | | |
|
|
| T |
4356956 |
gaaattctgttcaaaagattttgaaatgatttaccaaagtcaccggtttgacgacgaacttcggaagggtcaacatcatagaacactggcagtaccactt |
4356857 |
T |
|
| Q |
364 |
gtcctatagttctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaattataga |
463 |
Q |
| |
|
| |||||||| ||| |||| |||||||| ||||||||| || |||||| |||||||| ||||||||||| ||||| || ||||||| |||| |||| |
|
|
| T |
4356856 |
ggcctatagtactgtaacacgacattatttgaaccaactctcgcagacaccatgacgaatcagcatagtttttggagaagacgataacagcaattctaga |
4356757 |
T |
|
| Q |
464 |
ctcttcgattgcttgtagta |
483 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
4356756 |
gatttcgattgcttggagta |
4356737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 330 - 415
Target Start/End: Complemental strand, 25567182 - 25567097
Alignment:
| Q |
330 |
ggatcaacatcatagaacaccggcaacactatctgtcctatagttctgcgacactccattattttaaccaactcattcaaacacca |
415 |
Q |
| |
|
||||| |||||||||||||| ||||| || ||||| | ||| | ||| |||||| |||||| || |||||||||||||||||||| |
|
|
| T |
25567182 |
ggatctacatcatagaacactggcaaaacaatctgccttatggctctatgacacttcattatcttcaccaactcattcaaacacca |
25567097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 514
Target Start/End: Complemental strand, 4502 - 4374
Alignment:
| Q |
386 |
cattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaattatagactcttcgattgcttgtagtagt |
485 |
Q |
| |
|
|||||||||| |||| |||| ||||||||| |||| |||||||||||||||||||| || | ||||||| ||||||||| ||||| ||| || | |
|
|
| T |
4502 |
cattattttatccaattcatccaaacaccattttgaattggcatagttttttgagaaaacaattaaagaaatttgagactcttcaattgcacgtaataat |
4403 |
T |
|
| Q |
486 |
gatgttgcaatgtgatctccacttggaag |
514 |
Q |
| |
|
||||||| ||||| |||||| ||| |||| |
|
|
| T |
4402 |
gatgttgaaatgtaatctcctctttgaag |
4374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 514
Target Start/End: Original strand, 22589106 - 22589257
Alignment:
| Q |
363 |
tgtcctatagttctgcgacactccattattttaaccaactcattcaaacaccacgacgaatctgcatagttttttgagaaaactataacagaaattatag |
462 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||| |||| |||| ||||||||| |||| |||||||||||||||||||| || | ||||||| || |
|
|
| T |
22589106 |
tgtcctatggttctgtaacacttcattattttttccaattcatccaaacaccattttgaattggcatagttttttgagaaaacaattaaagaaatttgag |
22589205 |
T |
|
| Q |
463 |
actcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaag |
514 |
Q |
| |
|
||||||| ||||| | | || |||||||| ||||| |||||| ||| |||| |
|
|
| T |
22589206 |
actcttcaattgcacggaataatgatgttgaaatgtaatctcctctttgaag |
22589257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 529
Target Start/End: Original strand, 3051 - 3086
Alignment:
| Q |
494 |
aatgtgatctccacttggaagtgaatcatcgtccat |
529 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3051 |
aatgtgatctccactttgaagtgaatcatcgtccat |
3086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University