View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21206_high_12 (Length: 236)
Name: NF21206_high_12
Description: NF21206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21206_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 34356105 - 34356221
Alignment:
| Q |
106 |
gagttaattacatagtatatctcttattcctttaaatcaagagttaagaggtttcctagactttttgacctgtcaatgtaattttcctttaaatcaagag |
205 |
Q |
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| T |
34356105 |
gagttaattacatagtatatctcttattcctttaaatcaagagttaaaaggtttcctagaatttttgacctgtcaatgtaattttcgtttaaatcaagag |
34356204 |
T |
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| Q |
206 |
ttaagatgctaaatatt |
222 |
Q |
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| T |
34356205 |
ttaagatgccaaatatt |
34356221 |
T |
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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 34356001 - 34356069
Alignment:
| Q |
4 |
tacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaagccggagcttaacaactatac |
72 |
Q |
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| T |
34356001 |
tacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaagccagagcttaacaactatac |
34356069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 24427741 - 24427785
Alignment:
| Q |
8 |
ctatcaaattgtatgtcactcaaccattgtaaagccgaatgcaag |
52 |
Q |
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| T |
24427741 |
ctatcaaattgcatgtcactcaaccattataaagccaaatgcaag |
24427785 |
T |
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