View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21206_high_6 (Length: 337)

Name: NF21206_high_6
Description: NF21206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21206_high_6
NF21206_high_6
[»] chr3 (2 HSPs)
chr3 (9-337)||(11623220-11623542)
chr3 (235-307)||(25317871-25317943)
[»] chr6 (2 HSPs)
chr6 (236-337)||(23344608-23344709)
chr6 (235-337)||(29716732-29716834)
[»] chr8 (4 HSPs)
chr8 (256-337)||(1876471-1876551)
chr8 (264-327)||(35501064-35501127)
chr8 (256-324)||(31844206-31844274)
chr8 (235-315)||(32133663-32133743)
[»] chr2 (1 HSPs)
chr2 (264-337)||(28695609-28695682)
[»] chr7 (3 HSPs)
chr7 (235-307)||(3267578-3267650)
chr7 (235-307)||(26871837-26871909)
chr7 (271-324)||(44452045-44452098)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 11623220 - 11623542
Alignment:
Q  9 agagagatgaatatgacaagagtatccattatccactaattatgtgtttattgtgtgtggttatattctagttttggacttcttttacaatcttttggaa 108  Q
    ||||| ||||||||||||||    |||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  11623220 agagacatgaatatgacaag----tccattatccactaattatgtgttcattgtgtgtggttatatt--agttttggacttcttttacaatcttttggaa 11623313  T
Q  109 aaaggagattcctcttgtgatgttcatgattagagaaattgtgaattattagccacagtatgcattgattcttctgcagtgtgccaaaatcatgtaaaac 208  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11623314 aaaggagattcctcttgtgatgttcatgtttagagaaattgtgaattattagccacagtatgcattgattcttctgcagtgtgccaaaatcatgtaaaac 11623413  T
Q  209 aaagaaacccccattttccttcaggcaaatgttaaccagtgtccttggggcattggttaagcactttcaacagtaa-ttttttaaaaaagtttgtgtaat 307  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||  |||| ||||||| ||||||||||||  |||| |||||||  |||||||||||||     
T  11623414 aaagaaa-ccccattttccttcagggaaatgttaactagtgtctctgggacattggtaaagcactttcaatggtaatttttttattaaagtttgtgtaaa 11623512  T
Q  308 aaggtgcaatggaaattaaacattttgaca 337  Q
     | |||||||||||||| ||||||||||||    
T  11623513 taagtgcaatggaaattgaacattttgaca 11623542  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 25317943 - 25317871
Alignment:
Q  235 aaatgttaaccagtgtccttggggcattggttaagcactttcaacagtaattttttaaaaaagtttgtgtaat 307  Q
    |||||||||||||||||   |||||| |||||||| || || || ||||| |||||| |||||||||||||||    
T  25317943 aaatgttaaccagtgtctccggggcactggttaaggaccttaaatagtaaatttttataaaagtttgtgtaat 25317871  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 337
Target Start/End: Complemental strand, 23344709 - 23344608
Alignment:
Q  236 aatgttaaccagtgtccttggggcattggttaagcactttcaacagtaattttttaaaaaagtttgtgtaataaggtgcaatggaaattaaacattttga 335  Q
    ||||||||| |||| ||  |||||| |||||| ||||||| ||  |||| |||||| ||||||||||||||||| ||||| |||||||| |||| |||||    
T  23344709 aatgttaacgagtgcccccggggcactggttatgcactttaaatggtaactttttataaaagtttgtgtaataaagtgcattggaaattgaacactttga 23344610  T
Q  336 ca 337  Q
    ||    
T  23344609 ca 23344608  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 29716732 - 29716834
Alignment:
Q  235 aaatgttaaccagtgtccttggggcattggttaagcactttcaacagtaattttttaaaaaagtttgtgtaataaggtgcaatggaaattaaacattttg 334  Q
    |||||||||| |||| ||  |||||| |||||||| ||||| ||  ||||  |||||  |||||||||||||||| ||||| |||||||| || | ||||    
T  29716732 aaatgttaactagtgcccccggggcactggttaaggactttaaatggtaaccttttatgaaagtttgtgtaataaagtgcattggaaattgaaaactttg 29716831  T
Q  335 aca 337  Q
    |||    
T  29716832 aca 29716834  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 1876471 - 1876551
Alignment:
Q  256 gggcattggttaagcactttcaacagtaattttttaaaaaagtttgtgtaataaggtgcaatggaaattaaacattttgaca 337  Q
    |||||||||||||| ||||| ||  |||||||||||  |||||||||||||| | ||||| |||||||| || |||||||||    
T  1876471 gggcattggttaaggactttaaatggtaattttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaattttgaca 1876551  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 35501064 - 35501127
Alignment:
Q  264 gttaagcactttcaacagtaattttttaaaaaagtttgtgtaataaggtgcaatggaaattaaa 327  Q
    |||||| ||||| || | ||| |||||| ||||||||||||||||| ||||| |||||||||||    
T  35501064 gttaaggactttaaatattaaatttttataaaagtttgtgtaataaagtgcattggaaattaaa 35501127  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 31844206 - 31844274
Alignment:
Q  256 gggcattggttaagcactttcaacagtaattttttaaaaaagtttgtgtaataaggtgcaatggaaatt 324  Q
    |||||||||||||| ||||| || ||||| ||||||  ||||||||| |||| | ||||| ||||||||    
T  31844206 gggcattggttaaggactttaaatagtaactttttatgaaagtttgtataatgaagtgcattggaaatt 31844274  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 32133663 - 32133743
Alignment:
Q  235 aaatgttaaccagtgtccttggggcattggttaagcactttcaacagtaattttttaaaaaagtttgtgtaataaggtgca 315  Q
    |||||||||| |||| ||  || ||| |||||||| | ||| || ||||||||||||  |||||||||||||||| |||||    
T  32133663 aaatgttaactagtgcccccggagcactggttaaggaatttaaatagtaattttttatgaaagtttgtgtaataaagtgca 32133743  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 28695609 - 28695682
Alignment:
Q  264 gttaagcactttcaacagtaattttttaaaaaagtttgtgtaataaggtgcaatggaaattaaacattttgaca 337  Q
    ||||| |||||| || ||||| |||||| |||||||||||||||||  |||| |||||||| |||| |||||||    
T  28695609 gttaaacactttaaatagtaactttttataaaagtttgtgtaataaattgcattggaaattgaacactttgaca 28695682  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 3267578 - 3267650
Alignment:
Q  235 aaatgttaaccagtgtccttggggcattggttaagcactttcaacagtaattttttaaaaaagtttgtgtaat 307  Q
    ||||||||||||||||||| |||||| |||||||| || |  || || || |||||| |||||||||||||||    
T  3267578 aaatgttaaccagtgtcctaggggcactggttaaggacctaaaatagcaagtttttataaaagtttgtgtaat 3267650  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 26871909 - 26871837
Alignment:
Q  235 aaatgttaaccagtgtccttggggcattggttaagcactttcaacagtaattttttaaaaaagtttgtgtaat 307  Q
    |||||||||| | ||| ||||||| | |||||||| || || || |||||||||||| |||||||||||||||    
T  26871909 aaatgttaactaatgttcttggggtactggttaaggaccttaaatagtaattttttataaaagtttgtgtaat 26871837  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 44452045 - 44452098
Alignment:
Q  271 actttcaacagtaattttttaaaaaagtttgtgtaataaggtgcaatggaaatt 324  Q
    ||||| || ||||||||||||  |||||||||||||||| ||||| ||||||||    
T  44452045 actttaaatagtaattttttatgaaagtttgtgtaataaagtgcattggaaatt 44452098  T

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