View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21206_high_7 (Length: 318)
Name: NF21206_high_7
Description: NF21206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21206_high_7 |
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| [»] scaffold0023 (1 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 93 - 310
Target Start/End: Original strand, 4734065 - 4734282
Alignment:
| Q |
93 |
atggtagcagcattacttcgccttgtcggttcttgccgattatttcagcaattgtggtttgttcgcaatcaatttctctataaccagaaattcttgtaat |
192 |
Q |
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| T |
4734065 |
atggtagcagcactacttcgccttgtcggttcttgccgattatttaagcaattgtggtttgtttgcaatcaatttctctataaccagaaattcttgtaat |
4734164 |
T |
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| Q |
193 |
gttgttttaattcttgttttcgggtagataggttgttcataagcagtgaaaattcaccatggaagatatggagtggttactacaggtaaataataatgaa |
292 |
Q |
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| T |
4734165 |
gttgttttaattcttgttttcggctagataggttgttcataagtagtgaaaattcaccatggaagatatggagtggttactacaagcaaataatgatgaa |
4734264 |
T |
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| Q |
293 |
ataaaactaagttcatct |
310 |
Q |
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|||||||||||||||||| |
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| T |
4734265 |
ataaaactaagttcatct |
4734282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 38316456 - 38316332
Alignment:
| Q |
150 |
tttgttcgcaatcaatttctctataaccaga-aattcttgtaatgttgttttaattcttgttttcgggtagataggttgttcataagcagtgaaaattca |
248 |
Q |
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| T |
38316456 |
tttgttcgctgtcaatttctctctaaccagacaactcttgcaatgttgttttatttatggtttttggctagacaatttgttcataagcaatggaaattca |
38316357 |
T |
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| Q |
249 |
ccatggaagatatggagtggttact |
273 |
Q |
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| T |
38316356 |
ctatcaaagatatggagtggttact |
38316332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 9706269 - 9706377
Alignment:
| Q |
25 |
ttctttatcaaatcttcaattgcttctcggagttggaagcattcttctgtgtcgtggccccgactctgatggtagcagcattacttcgccttgtcggttc |
124 |
Q |
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| T |
9706269 |
ttctttatcaaatcttcaattgcttctcggagtatgaggcattcttccgtatcgtggccccaacttcgatggtagcgggaatacttcgctttgtcggttc |
9706368 |
T |
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| Q |
125 |
ttgccgatt |
133 |
Q |
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||||||||| |
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| T |
9706369 |
ttgccgatt |
9706377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 13572536 - 13572644
Alignment:
| Q |
25 |
ttctttatcaaatcttcaattgcttctcggagttggaagcattcttctgtgtcgtggccccgactctgatggtagcagcattacttcgccttgtcggttc |
124 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||| || |||||||||| ||| ||||||||| | | |||||||| |||||||||| |
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| T |
13572536 |
ttctttatcaaatcttcaattgcttctcggagtatgaggcattcttccgtatcgtggccccaacttcgatggtagcgggaatacttcgctttgtcggttc |
13572635 |
T |
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| Q |
125 |
ttgccgatt |
133 |
Q |
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| T |
13572636 |
ttgccgatt |
13572644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 20400671 - 20400741
Alignment:
| Q |
25 |
ttctttatcaaatcttcaattgcttctcggagttggaagcattcttctgtgtcgtggccccgactctgatg |
95 |
Q |
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| T |
20400671 |
ttctttatcaaatccttaatttcttcttggagttggaagcattcttctatgtgatggcctcgactctgatg |
20400741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 99187 - 99100
Alignment:
| Q |
25 |
ttctttatcaaatcttcaattgcttctcggagttggaagcattcttctgtgtcgtggccccgactctgatggtagcagcattacttcg |
112 |
Q |
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||||||||||| ||||| ||||| || || ||| || | | |||||||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
99187 |
ttctttatcaattcttcgattgcatcccgaagtaggtggaaatcttctgtatcgtggccacgactctgatggtagcagcagtacttcg |
99100 |
T |
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Target: scaffold0065 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 51455 - 51390
Alignment:
| Q |
16 |
aattttaccttctttatcaaatcttcaattgcttctcggagttggaagcattcttctgtgtcgtgg |
81 |
Q |
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| T |
51455 |
aattttcctttctttatcaaatcttcaattgcctcttggagctggtggcattcttccgtgtcgtgg |
51390 |
T |
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