View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21206_low_14 (Length: 202)
Name: NF21206_low_14
Description: NF21206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21206_low_14 |
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| [»] scaffold1268 (1 HSPs) |
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| [»] scaffold1267 (1 HSPs) |
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| [»] scaffold2116 (1 HSPs) |
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| [»] scaffold0891 (1 HSPs) |
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Alignment Details
Target: scaffold1268 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 2219 - 2048
Alignment:
| Q |
17 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaatgtgttgattata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2219 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaatgtgttgattata |
2120 |
T |
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| Q |
117 |
atcattgatgatcttaaacaattgtgtgctttagaaccttggaaattaaacattacatcatttagatctgtg |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2119 |
atcattgatgatcttaaacaattgtgtgctttagaaccttggaaattaaacattacatcatttagatctgtg |
2048 |
T |
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Target: scaffold1267 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 2219 - 2048
Alignment:
| Q |
17 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaatgtgttgattata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2219 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaatgtgttgattata |
2120 |
T |
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| Q |
117 |
atcattgatgatcttaaacaattgtgtgctttagaaccttggaaattaaacattacatcatttagatctgtg |
188 |
Q |
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| T |
2119 |
atcattgatgatcttaaacaattgtgtgctttagaaccttggaaattaaacattacatcatttagatctgtg |
2048 |
T |
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Target: scaffold2116 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold2116
Description:
Target: scaffold2116; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 1053 - 882
Alignment:
| Q |
17 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaatgtgttgattata |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
1053 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaaaagtgttgattata |
954 |
T |
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| Q |
117 |
atcattgatgatcttaaacaattgtgtgctttagaaccttggaaattaaacattacatcatttagatctgtg |
188 |
Q |
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| T |
953 |
atcattgatgatcttatacaattttgtgcttcagaaccttggaaattaaacattacatcatttagatctgtg |
882 |
T |
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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 35848773 - 35848865
Alignment:
| Q |
17 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaatgtgtt |
109 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
35848773 |
accaagcatgtgaagtgggccaatgctatatatgttagggtttttggccctaagggtgtccagggcttcaccttctaattcttcaaatgtgtt |
35848865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 35866444 - 35866536
Alignment:
| Q |
17 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaatgtgtt |
109 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
35866444 |
accaagcatgtgaagtgggccaatgctatatatgttagggtttttggccctaagggtgtccagggcttcaccttctaattcttcaaatgtgtt |
35866536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 35754869 - 35755036
Alignment:
| Q |
17 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaatgtgttgattata |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| | |||| || ||| ||||| |||| |||||||||||||||||||||||| |
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| T |
35754869 |
accaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagtgtagcaatgacttcatcttctaattcttcaaatgtgttgattata |
35754968 |
T |
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| Q |
117 |
atcattgatgatcttaaacaattgtgtgctttagaaccttggaaattaaacattacatcatttagatc |
184 |
Q |
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|| |||||||||| ||||| || |||| | |||||| ||||| |||||| | |||||||||||| |
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| T |
35754969 |
attgttgatgatctcaaacagttttgtgactcagaacccatgaaatcaaacataatatcatttagatc |
35755036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 35774992 - 35775075
Alignment:
| Q |
17 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttc |
100 |
Q |
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|||||||||||||| || |||||| ||||||||| || || |||||||||||||||||||| | |||||||||||||||||| |
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| T |
35774992 |
accaagcatgtgaatcgggccaatgctatatatgtttggattgttggccctaagggtgtcaagggtttcaccttccaattcttc |
35775075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 3099 - 2972
Alignment:
| Q |
17 |
accaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaatgtgttgattata |
116 |
Q |
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|||||||||||||| || |||||| ||||||||| || || |||||||||||||||||||| | |||||||||||||||||| || ||||| || || |
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| T |
3099 |
accaagcatgtgaatcgggccaatgctatatatgtttggattgttggccctaagggtgtcaagggtttcaccttccaattcttcgaacgtgttaatgatt |
3000 |
T |
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| Q |
117 |
atcattgatgatcttaaacaattgtgtg |
144 |
Q |
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|| | |||||||| |||||||| |||| |
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| T |
2999 |
attgtcgatgatctcaaacaattttgtg |
2972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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