View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21206_low_2 (Length: 476)
Name: NF21206_low_2
Description: NF21206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21206_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 74 - 458
Target Start/End: Original strand, 47317498 - 47317882
Alignment:
| Q |
74 |
ataaaatatacgccgtataaaagagcatttgtgctcatacatgaaacaaaatccaaaaccattatcatgcactatgcaggttaagctttctaagtttttg |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
47317498 |
ataaaatatacgccgtataaaagagcatttgtgctcgtacatgaaacaaaatccaaaaccattatcatgcactacgcagcttaagctttctaagtttttg |
47317597 |
T |
|
| Q |
174 |
atagaaacaagtcaaacaaatatgaaattatatctagggaaacaaaaagttgttgcacacactaaataagtttgttnnnnnnntagtcaacctacaacac |
273 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317598 |
atagaaacaagtcaaacaaatatgaaactatatctagggaaacaaaaagttgttgcacacactaaataagtttgttaaaaaaatagtcaacctacaacac |
47317697 |
T |
|
| Q |
274 |
aaatgaaacactttaatttagtacaaaccatcaaatcccattcattaagaattgaagctaaaaacaataaaacttaccnnnnnnnntgaaatttgctact |
373 |
Q |
| |
|
||||||| |||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
47317698 |
aaatgaagcactttaatttagtgcaaaccaccaaatcccattcataaagaattgaagccaaaaacaataaaacttaccaaaaaaaatgaaatttgctact |
47317797 |
T |
|
| Q |
374 |
accaagcaaaaatcaagtttaaaagacaataccacgacaagttgcaacctcacaccatcaagttattgcaccctaaatttaaagt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47317798 |
accaagcaaaaatcaagtttaaaagacaataccacgacaagttgcaacctcacaacatcaagttattgcaccctaaatttaaagt |
47317882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 47317230 - 47317311
Alignment:
| Q |
1 |
atgaataataaggtattgcataaaaaatgggtggataacagattttcttttttgttaaagttggtgcagagtaataaaatat |
82 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47317230 |
atgaataataaggtatggcataaaaaatgggtggataacagattttcttttttgttaaagttggtgcagagtaataaaatat |
47317311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University