View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21206_low_3 (Length: 468)
Name: NF21206_low_3
Description: NF21206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21206_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 43699208 - 43699652
Alignment:
| Q |
1 |
acgggagtgcttggtccgagttgcgaataactgtaacaccaggccaattcactctaccatcagtgttagatccaggtccaacattctcaaactccacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699208 |
acgggagtgcttggtccgagttgcgaataactttaacaccaggccaattcactctaccatcagtgttagatccaggtccaacattctcaaactccacata |
43699307 |
T |
|
| Q |
101 |
agtaaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaacattgcaatatagccactgtggaatatgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699308 |
agtaaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaacattgcaatatagccactgtggaatatgcc |
43699407 |
T |
|
| Q |
201 |
ctccaaggacgacccaatgttccacgcacctctgattttctgccttcatcttcaggtgacatggtgaaattacaatgttggaatgtgaaacctgtttttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699408 |
ctccaaggacgacccaatgttccacgcacctctgattttttgccttcatcttcaggtgacatggtgaaattacaatgttggaatgtgaaacctgtttttt |
43699507 |
T |
|
| Q |
301 |
cagatggatttccacgtgactgagcggtgaataccacaaactgccgatagcgtgcataaaccatacagtcttgaaatacagctgcagcgttgccgaagat |
400 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699508 |
cagatggatttccacgtgattgtgcggtgaataccacgaactgtcgatagcgtgcataaaccatacagtcttgaaatacagctgcagcgttgccgaagat |
43699607 |
T |
|
| Q |
401 |
gaagtcgacgataccatagatttcacagtttttgtagaattgtct |
445 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
43699608 |
gaagtcgacggtaccatatatttcacagtttttgtagaattgtct |
43699652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 445
Target Start/End: Original strand, 45514012 - 45514454
Alignment:
| Q |
3 |
gggagtgcttggtccgagttgcgaataactgtaacaccaggccaattcactctaccatcagtgttagatccaggtccaacattctcaaactccacataag |
102 |
Q |
| |
|
|||||||||| || | |||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
45514012 |
gggagtgctttgtttgggttgcgaagaactgtaacacctggccaatccactctaccatcagtgtttgatccaggtccaacattctcaaactcaacataag |
45514111 |
T |
|
| Q |
103 |
taaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaacattgcaatatagccactgtggaatatgccct |
202 |
Q |
| |
|
|||| |||||| ||| | || |||| |||||||||||| | ||| || | |||||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
45514112 |
taactttatcagtggccagacctgacatcccttcccaacctcttggatcaaccattgaatctatgaaacaatgcaatatagcaactgttgaatatgccct |
45514211 |
T |
|
| Q |
203 |
ccaaggacgacccaatgttccacgcacctctgattttctgccttcatcttcaggtgacatggtgaaattacaatgttggaatgtgaaacctgttttttca |
302 |
Q |
| |
|
|||||||||||| |||||| || |||||||||| ||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
45514212 |
ccaaggacgacctaatgttgcatgcacctctgactttctcttctcatcttcaggtgacattgtgaatttacaacgttggaatgtgaaacctgttttttca |
45514311 |
T |
|
| Q |
303 |
gatggatttccacgtgactgagcggtgaataccacaaactgccgatagcgtgcataaaccatacagtcttgaaatacagctgcagcgttgccgaagatga |
402 |
Q |
| |
|
||||| || |||||||||| ||||||||| ||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
45514312 |
tatggactttcacgtgactgtgcggtgaatgtcacaaactgtctatagcgtgcataaaccatgcagtcttgaaatacagcggcagcgttgccgtagatga |
45514411 |
T |
|
| Q |
403 |
agtcgacgataccatagatttcacagtttttgtagaattgtct |
445 |
Q |
| |
|
||||||| | || || |||||||||||||||||||||||||| |
|
|
| T |
45514412 |
agtcgacagtgccgtatatttcacagtttttgtagaattgtct |
45514454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University