View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21206_low_5 (Length: 338)
Name: NF21206_low_5
Description: NF21206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21206_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 10011058 - 10011394
Alignment:
| Q |
1 |
caccaagttctctccttccattgtctgtatgctttcaatacacactttcctttaaacaaagaagaagcannnnnnnnnnnnnnnnnnatggaagaaagac |
100 |
Q |
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| T |
10011058 |
caccaagttctctccttccattgtctgtatgctttcaatacacactttcctttaaacaaaaaagaagcaattttttttttggtttttatggaagaaagac |
10011157 |
T |
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| Q |
101 |
caatcgaacctatgnnnnnnntatagaagagaggtgctcctgttttggagaattggacatnnnnnnntttcgttaaaaattatctttttgttctatattc |
200 |
Q |
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| T |
10011158 |
caatcgaacctatgaaaaaaatatagaagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtctttttgttctatattc |
10011257 |
T |
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| Q |
201 |
tttctcgtttctgaagcaaaagcgnnnnnnnnnnnnnnnnnnncgaagggagacataaatgatttagaagagttggacatcaaattcatatcagtnnnnn |
300 |
Q |
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| T |
10011258 |
tttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttagaagagttggacatcaaattcatatcagt-aaaa |
10011356 |
T |
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| Q |
301 |
nnntagaacactaccacagagcttggatttggacaaca |
338 |
Q |
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| T |
10011357 |
aaatagaacaccaccacagagcttggatttggacaaca |
10011394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 561565 - 561652
Alignment:
| Q |
127 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttcgttaaaaattatctttttgttctatattctttctcgtttctga |
214 |
Q |
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| T |
561565 |
aagagaggtgttcctgttttggagaattggacatcaaattttttccttcaaaattgtccttttcttctatattctttctcgtttctga |
561652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 561428 - 561487
Alignment:
| Q |
1 |
caccaagttctctccttccattgtctgtatgctttcaatacacactttcctttaaacaaa |
60 |
Q |
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| T |
561428 |
caccaagttctctcattcaattgtatgtatgctttcattagacactttcctttaaacaaa |
561487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 17688983 - 17688937
Alignment:
| Q |
20 |
attgtctgtatgctttcaatacacactttcctttaaacaaagaagaa |
66 |
Q |
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| T |
17688983 |
attgtatgtatgctttcattagacactttcctttaaacaaaaaagaa |
17688937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 1678749 - 1678795
Alignment:
| Q |
20 |
attgtctgtatgctttcaatacacactttcctttaaacaaagaagaa |
66 |
Q |
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| T |
1678749 |
attgtatgtatgctttcattagacactttcctttaaacaaaaaagaa |
1678795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 4778812 - 4778852
Alignment:
| Q |
20 |
attgtctgtatgctttcaatacacactttcctttaaacaaa |
60 |
Q |
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| T |
4778812 |
attgtatgtatgctttcattagacactttcctttaaacaaa |
4778852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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