View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21206_low_9 (Length: 252)
Name: NF21206_low_9
Description: NF21206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21206_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 28536934 - 28536698
Alignment:
| Q |
21 |
taatgaagttagaaattcagactaacagattaaaaaagttaagtttgtggaatgatcttgttttttggatcac------tgcattattatggttctatta |
114 |
Q |
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| T |
28536934 |
taatcaagttagaaattcagaataacagattaaaatagttaagtttgtggaatgatcttgttgtatcaatctcctatgttttttttttttggatcactag |
28536835 |
T |
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| Q |
115 |
tttgttcacattgctgcaattgccacattgtttgttaaattccataaaatgttgattcttatcattacaagctgttattgttgctaaatttattgtgttt |
214 |
Q |
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| T |
28536834 |
tttgttcaccttgctgcaattgccacattgtttgttaaattccgtaaaatggtgattcttattattacaagccgttattgttgctaaacttgttgtgttt |
28536735 |
T |
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| Q |
215 |
gatctatgattgagaccttcttatcttttattcttca |
251 |
Q |
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| T |
28536734 |
gatctatgattgagaccttcttatcttttattcttca |
28536698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 35686724 - 35686587
Alignment:
| Q |
114 |
atttgttcacattgctgcaattgccacattgtttgttaaattccataaaatgttgattcttatcattacaagctgttattgttgctaaatttattgtgtt |
213 |
Q |
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| T |
35686724 |
atttgtttaccttactgcaattgccacattgtttgttaaatcccgtaaaatggtgattcttattattacaagccgttattgttgctaaactttttgtgtt |
35686625 |
T |
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| Q |
214 |
tgatctatgattgagaccttcttatcttttattcttca |
251 |
Q |
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| T |
35686624 |
tgatctataattgagacctttttatcttttattcttca |
35686587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 35686839 - 35686778
Alignment:
| Q |
21 |
taatgaagttagaaattcagactaacagattaaaaaagttaagtttgtggaatgatcttgtt |
82 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
35686839 |
taatcaagttagaaattcagactaacagattaaaaaagttatgtttgtgaaatgatcttgtt |
35686778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 7723026 - 7722965
Alignment:
| Q |
21 |
taatgaagttagaaattcagactaacagattaaaaaagttaagtttgtggaatgatcttgtt |
82 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7723026 |
taatcaagttagaaattcagactaacagactaaaaaagttaagtttgtggaatgatcttgtt |
7722965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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