View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21207_high_11 (Length: 355)
Name: NF21207_high_11
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 34018724 - 34018399
Alignment:
| Q |
18 |
caatcatggttgcctactgtgcttgaactgatccaatctaatgatgatgctttttccctaccgtctgcttcttttttcccctgttctgctagtgcattaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34018724 |
caatcatggttgcctactgtgcttgaactgatccaatctaatgatgatggtttttccctaccgtctgcttcttttttcccctgttctgctagtgcattaa |
34018625 |
T |
|
| Q |
118 |
gaaccagaagaagatggtgagttcaaacgttattcacttgtcttta-aaacattcatttcatgattaactaatagaagcgaatgccactgaattctgatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34018624 |
gaaccagaagaagatggtgagttcaaacgttattcacttgtcttttgaaacattcatttcatgattaactaatagaagcgaatgccactgaattctgatc |
34018525 |
T |
|
| Q |
217 |
atgttggaaaacaaacacgaagctttattcttctgcctgatctagctatactccattggtagcttatccatgatgcacaagttgttggttattctttcaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34018524 |
atgttggaaaacaaacacgaagctttattcttctgcctgatctagctatactccattggtagcttatccatgatgcacaagttgttggttattctttcaa |
34018425 |
T |
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| Q |
317 |
atgatgtgatttaaaatgtcacctct |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34018424 |
atgatgtgatttaaaatgtcacctct |
34018399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 33156083 - 33155763
Alignment:
| Q |
18 |
caatcatggttgcctactgtgcttgaactgatccaatctaatgatgatgctttttccctaccgtctgcttcttttttcccctgttctgctagtgcattaa |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33156083 |
caatcatggctgcctactgtgcttgaactgatccaatctaatgatgatggtttttccctaccgtctgcttcttttttcccctgttctgctagtgcattaa |
33155984 |
T |
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| Q |
118 |
gaaccagaagaagatggtgagttcaaacgttattcacttgtc-tttaaaacattcatttcatgattaactaatagaagcgaatgccactgaattctgatc |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33155983 |
gaaccagaagaagatggtgagttcaaacgctattcacttgtcttttgaaacattcatttcatgattaactaatagaagcgaatgccactgaattctgatc |
33155884 |
T |
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| Q |
217 |
atgttggaaaacaaacacgaagctttattcttctgcctgatctagctatactccattggtagcttatccatgatgcacaagttgttggttattctttcaa |
316 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33155883 |
atgttggaaaacaaaca-gaagctttattcttctgcctgatctagctatactccatt----gcttatccatgatgcacaagttgttggttattctttcaa |
33155789 |
T |
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| Q |
317 |
atgatgtgatttaaaatgtcacctct |
342 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
33155788 |
atgatgtgatttaaaatgtcacctct |
33155763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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