View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21207_high_12 (Length: 353)
Name: NF21207_high_12
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 51 - 338
Target Start/End: Original strand, 882506 - 882801
Alignment:
| Q |
51 |
cttttgaagtggaagatattcattaaataaaaatatatgaatccttacaattgtagagcaacaacaatagcctcgggacacatcccacccaagacttaga |
150 |
Q |
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| T |
882506 |
cttttgaagtggaagatattcattaaataaaaagatatgaatccttacgaatgtagagcaacaacagtagcctcgggacacatcccacccaagacttaga |
882605 |
T |
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| Q |
151 |
acgaagacaagatgcttacaaatgtttatacatctcttaataaaagcaacattgacattaattctcatatagagggataataatacaatctaaaatacta |
250 |
Q |
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| T |
882606 |
acgaagacaagatgcttacaaatgtttatacatctcttaataaaaacaacattgacattaattctcatatagagggataataatacaatctgaaattcta |
882705 |
T |
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| Q |
251 |
tgatctaatttaagacaccat------ctcaaggccatt--ctgagccagaataggagaaattaagannnnnnnaaaggtgtgttgtagatgtaac |
338 |
Q |
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| T |
882706 |
tgatctaatttaagacaccatctcaacctcaaggccattgcctgagccagaataggagaaattaagatttttttaaaggtgtgttgtagatgtaac |
882801 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 12918873 - 12918914
Alignment:
| Q |
174 |
gtttatacatctcttaataaaagcaacattgacattaattct |
215 |
Q |
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| T |
12918873 |
gtttttacatctcttaataaaagcaacactaacattaattct |
12918914 |
T |
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