View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21207_high_14 (Length: 319)
Name: NF21207_high_14
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 15513473 - 15513764
Alignment:
| Q |
18 |
agtaacaaagtcctatgccacctagcaccttattaattattttctcttgtttgtttattctataagaaagaatcaattagccgaacctgtataatctttc |
117 |
Q |
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| T |
15513473 |
agtaacaaagtcctatgccacctagcaccttattaattattctctcttgtttgtttattctataagaaagaatcaattagccgaacctatataatctttc |
15513572 |
T |
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| Q |
118 |
accactatttatattaattctccattttggtacaaacatcaaagaaattaattaatataatcaagtgcatatattcaacaatggcttcatcactcaagtt |
217 |
Q |
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| T |
15513573 |
accactatttatattaattctccattttggtacaaacatcaaagaaattaattattataatcaagtgcatatattcaacaatggctttatcactcaagtt |
15513672 |
T |
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| Q |
218 |
caatgtgtttgtagcatgtcttttggttttagttgcagttgctgctgctcaatatggatcaggtgggtctgactatgatgcaaatgctccct |
309 |
Q |
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| T |
15513673 |
caatgtgtttgtagcatgtcttttggttttaattgcagttgctgctgctcaatatggatcaggtggttctgactatgatgcaaatgctccct |
15513764 |
T |
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Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 60 - 275
Target Start/End: Original strand, 9456124 - 9456340
Alignment:
| Q |
60 |
tctcttgtttgtttattctataagaaagaatcaattagccgaacctgtataatctttcaccactatttatattaattctccattttggtacaaa-catca |
158 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||| |||| |||| || ||||||||||||||||| | |||||| ||||| ||| | |
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| T |
9456124 |
tctcttgtttgtttattctacaagaaagaatcaactagccgaagttgtacaatccatctccactatttatattaatacctcatttttacacaaaacataa |
9456223 |
T |
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| Q |
159 |
aagaaattaattaatataatcaagtgcatatattcaacaatggcttcatcactcaagttcaatgtgtttgtagcatgtcttttggttttagttgcagttg |
258 |
Q |
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| T |
9456224 |
aattaagaaattaatatcatcaacttcatatattcaacaatggcttcaccactcaaattcaacgtgtttgtagtttgtattttggttttagttgcagttg |
9456323 |
T |
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| Q |
259 |
ctgctgctcaatatgga |
275 |
Q |
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| T |
9456324 |
ttgctgctcaatatgga |
9456340 |
T |
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