View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21207_high_17 (Length: 290)
Name: NF21207_high_17
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 7842338 - 7842072
Alignment:
| Q |
17 |
aaaagtttctttcacttgctctcatgcattagagaagnnnnnnntcatttagagaatgattttgtatctaactcaagtaatgcaattgctttaatttgtt |
116 |
Q |
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| T |
7842338 |
aaaagtttctttcacttgctctcatgcattagagaagaaaaaaatcatttagagaatgattttgtatctaactcaagtaatgcaattgctttaatttgtt |
7842239 |
T |
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| Q |
117 |
tgtatgtataggagcttctgagtatgctttgcagaaggctagagataccaaggaagcaatttcaggagccatgtcatacggaagggaaaaaacatcggag |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7842238 |
tgtatgtataggagcttctgagtatgcttcgcagaaggctagagataccaaggaagcaatttcaggagccatttcatacggaagggaaaaaacatcggag |
7842139 |
T |
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| Q |
217 |
tcttataatcgaattggaggtgctgaaaacatcagaatgccaacagaaaaagtgactgaaacctatg |
283 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7842138 |
tcttataatcgaattggaggtgatgaaaacatcagaatgccaacagaaaaagtgactgaaacctatg |
7842072 |
T |
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