View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21207_high_22 (Length: 261)
Name: NF21207_high_22
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 27826321 - 27826082
Alignment:
| Q |
19 |
aaatatggcttgtctccaagctcatcttctagagtcttcaagccttctataaacttctttttaccttcctcttgttcttcaacctttcctttccatagct |
118 |
Q |
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| T |
27826321 |
aaatatggcttgtctccaagctcatcttctagagtcttcaagccttctataaacttctttttaccttcctcttgttcttcaacctttcctttccatagct |
27826222 |
T |
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| Q |
119 |
tccttcgaatgctgtatacctacatcaattagaatccaacaaaattaagccatgataccctatgaataactcnnnnnnnaaa----attaaaataatatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||| |
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| T |
27826221 |
tccttcgaatgctgtatacctacatcaattagaatccaacaaaattaagccatgataccctatgaataactctttttttaaaagatataaaaattatatg |
27826122 |
T |
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| Q |
215 |
tttggtgaaaacaccaaaattgactttatggcctatgcta |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
27826121 |
tttggtgaaaacaccaaaattgactttatggcctatgcta |
27826082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 27822382 - 27822217
Alignment:
| Q |
19 |
aaatatggcttgtctccaagctcatcttctagagtcttcaagccttctataaacttctttttaccttcctcttgttcttcaacctttcctttccatagct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||| |||| | || |
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| T |
27822382 |
aaatatggcttgtctccaagctcatcttctagagtcttcaagcattctataaacttctttttaccctcttcttgttcttcaccctttcctgtccacacct |
27822283 |
T |
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| Q |
119 |
tccttcgaatgctgtatacctacatcaattagaatccaacaaaattaagccatgataccctatgaat |
185 |
Q |
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|| ||| |||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
27822282 |
tctttccaatgttgtatacctacatcaattagaatccaa-taaattaaaccatgataccctatgaat |
27822217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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