View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21207_high_27 (Length: 236)
Name: NF21207_high_27
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38949997 - 38950216
Alignment:
| Q |
1 |
atatatagagatcaagtaaaaatcatgaacacaaatttattcatggtgaatttctagtcccc-----acttggagcatgagaagaagcaaatcattcatg |
95 |
Q |
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|||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
38949997 |
atatgtagagatcaagttgaaatcacgaacacaaatttattcatggtgaatttctagtccccttactagttggagcatgagaagaagcaaatcattcatg |
38950096 |
T |
|
| Q |
96 |
gaagactttgaaaggaccatatctatcatatatactttagaatccaatttaaattgaatcaaaatttcgaactgcttgaattccaattctgacagctcac |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950097 |
gaagactttgaaaggaccatatctatcatatatactttagaatccaattta-----aatcaaaatttcgaactgcttgaattccaattctgacagctcac |
38950191 |
T |
|
| Q |
196 |
aactctgccaaaaaccgagttacaag |
221 |
Q |
| |
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||||||||| |||||||||||||||| |
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| T |
38950192 |
aactctgcc-aaaaccgagttacaag |
38950216 |
T |
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