View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21207_high_4 (Length: 480)
Name: NF21207_high_4
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 213 - 464
Target Start/End: Original strand, 38482468 - 38482712
Alignment:
| Q |
213 |
aatggtattttgccataaaaggagaactaggacattccatcatacataatctaaggacatgaaagagttaaaggcttatgacgaaactccaatctaattt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38482468 |
aatggtattttgccataaaaggagaactaggacattccatcatacataatctaaggacatgaaagagttaaaggcttatgacgaaactccaatctaattt |
38482567 |
T |
|
| Q |
313 |
gaagatgatatctattatctaatatcaatttacatgtattcattgaaaacgtcttttaattgagtgatctaagtgtcatattaatgattctgtttttaaa |
412 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38482568 |
gaagatgatatc-------taatatcaatttacatgtattcattgaaaacgtcttttaattgagtgatctaagtgtcgtattaatgattctgtttttaaa |
38482660 |
T |
|
| Q |
413 |
ggggtgcaaagtcggtttgccgattgtgatgtaagatagtgatggttgttgg |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38482661 |
ggggtgcaaagtcggtttgccgattgtgatgtaagatagtgatggttgttgg |
38482712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 38482280 - 38482405
Alignment:
| Q |
38 |
cgtaggtagaaaaactctgaaccaaacatgctataagtatgtttaatttcaattaagagatatgcataca-------tttaatgtataacacaaattgaa |
130 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38482280 |
cgtaggtagaaaaactctgaaccaaacaggttataagtatgtttaatttcaatgaagagatatgcatacatttaatgtttaatgtataacacaaattgaa |
38482379 |
T |
|
| Q |
131 |
tagataattacttttgatggtttgat |
156 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
38482380 |
tagagaattacttttgatggtttgat |
38482405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University