View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21207_high_5 (Length: 424)
Name: NF21207_high_5
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 4951782 - 4952177
Alignment:
| Q |
14 |
agagtaatttatatctttataatggaaactggaaaatagtctcatctcattctcaatcatgaattttagaggaatcatctttatgttgagatgtgttgca |
113 |
Q |
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| T |
4951782 |
agagtaatttatatctttataatggaaactagaaaatagtctcatctcattctcaatcatgaattttagaggaatcatctttgtgttgagatgtgttgca |
4951881 |
T |
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| Q |
114 |
tggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagacgt |
213 |
Q |
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| T |
4951882 |
tggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagtcgt |
4951981 |
T |
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| Q |
214 |
gtattctcttgaacaactttgtcatgggactcagacacatggtttagtttgtcaacaaggttgtgattttcagttctgagtttcatcacttgtgaccaaa |
313 |
Q |
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| T |
4951982 |
gcattctcttgaacaactgtgtcatgtgactcagacacatggtttagtttgtcaacaaggttgtgattttcagttctgagtttcatcacttgtgaccaaa |
4952081 |
T |
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| Q |
314 |
gttcatccaagtgtttttgttttctcatccttgatctcctagctgattctctgtttgatatcattcgtcggtgcttcctttcgtcgatgatgttaa |
409 |
Q |
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| T |
4952082 |
gttcatccaagtgtttttgtttcctcatccttgatctcctagctgattctctgtttgatatcattcgtcggtgcttcctttcatcgatgatgttaa |
4952177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 64 - 404
Target Start/End: Complemental strand, 10483843 - 10483500
Alignment:
| Q |
64 |
tctcaatcatgaattttagaggaatcatc---tttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
160 |
Q |
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| T |
10483843 |
tctcaatcatgaattttagaggaatcatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
10483744 |
T |
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| Q |
161 |
tttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagacgtgtattctcttgaacaactttgtcatgggactcagacacatggtttag |
260 |
Q |
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| T |
10483743 |
tttgcatgtcagctaccatttggcgaagatcaaaagtttcttccttaagtcttgcattctcttgaacaactttgtcatgtgactcagacacatggtttag |
10483644 |
T |
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| Q |
261 |
tttgtcaacaaggttgtgattttcagttctgagtttcatcacttgtgaccaaagttcatccaagtgtttttgttttctcatccttgatctcctagctgat |
360 |
Q |
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||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |
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| T |
10483643 |
tttatcaacaaggttatgattttcagttctgagtctcaccacttgtgaccaaagttcatctaagtgcttttgtttcctcatccttgatctcctagctgat |
10483544 |
T |
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| Q |
361 |
tctctgtttgatatcattcgtcggtgcttcctttcgtcgatgat |
404 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10483543 |
tctctatttgatatcattcgtcggtgcttcctttcgtcgatgat |
10483500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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