View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21207_high_6 (Length: 408)

Name: NF21207_high_6
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21207_high_6
NF21207_high_6
[»] chr6 (10 HSPs)
chr6 (200-355)||(20505550-20505705)
chr6 (209-343)||(20475758-20475892)
chr6 (6-191)||(20505753-20505931)
chr6 (260-324)||(2917028-2917092)
chr6 (209-296)||(20517633-20517723)
chr6 (270-321)||(6869512-6869563)
chr6 (200-287)||(20493629-20493716)
chr6 (260-324)||(2930616-2930680)
chr6 (28-64)||(20476090-20476126)
chr6 (260-324)||(24566710-24566774)
[»] chr1 (1 HSPs)
chr1 (200-305)||(13072245-13072350)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 20505705 - 20505550
Alignment:
Q  200 ttgcatactaggatagttttctggaccaccaataccaacacaaaatttattaatagcattatcaataaatatcaaccattttgatgatttaacacaatca 299  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  20505705 ttgcataccaggatagttttctcgaccaccaataccaacacaaaatatattaataacattatcaataaatatcaaccattttgatgattcaacacaatca 20505606  T
Q  300 ggcttctttgtgaactcaatctcaattagtgtacctgtcaagatatcatagctttc 355  Q
    ||||||||||||||||||||||| ||| || |||| |||||||| |||| ||||||    
T  20505605 ggcttctttgtgaactcaatctcgattggtctacccgtcaagatctcatcgctttc 20505550  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 343
Target Start/End: Complemental strand, 20475892 - 20475758
Alignment:
Q  209 aggatagttttctggaccaccaataccaacacaaaatttattaatagcattatcaataaatatcaaccattttgatgatttaacacaatcaggcttcttt 308  Q
    |||||| ||||| |||||||||||||||||||||  ||| | |||| || |||||| ||||||||||||||||||||||| ||| |||| ||||||||||    
T  20475892 aggataattttcaggaccaccaataccaacacaagctttttgaataacactatcaacaaatatcaaccattttgatgattcaacgcaattaggcttcttt 20475793  T
Q  309 gtgaactcaatctcaattagtgtacctgtcaagat 343  Q
    |||||||| || |||||| ||||||| || |||||    
T  20475792 gtgaactcgatatcaattggtgtaccagtgaagat 20475758  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 20505931 - 20505753
Alignment:
Q  6 agtttactagcaatgtaaaaattcaagcaacagacttaataatttcatcttcataagaat---aagtttcagtaaacacataagaagaaatctggttatc 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    ||| |||| ||| ||| ||| |||||| || |  ||    
T  20505931 agttcactagcaatgtaaaaattcaagcaacagacttaataattccatcttcataagaattaacagtctcagaaaatacaaaagcagaaatttgttggtc 20505832  T
Q  103 agccaaaatcaaacgtcctccaccttcaccattattataaaaccaatatccaaacaaaaactagaagatccatcgacacaatatacaaa 191  Q
    || ||||||||||||||||||| |||||||||          |||||||   |||||||||||||||||||||| |||||| |||||||    
T  20505831 agtcaaaatcaaacgtcctccaacttcaccat----------ccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaa 20505753  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 2917092 - 2917028
Alignment:
Q  260 atcaataaatatcaaccattttgatgatttaacacaatcaggcttctttgtgaactcaatctcaa 324  Q
    ||||| ||| ||||||||||||||||||| | |||||||||||||||| || |||||||||||||    
T  2917092 atcaagaaacatcaaccattttgatgattcagcacaatcaggcttcttagtaaactcaatctcaa 2917028  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 20517723 - 20517633
Alignment:
Q  209 aggatagttttctggaccaccaataccaacacaaaatttatt---aatagcattatcaataaatatcaaccattttgatgatttaacacaa 296  Q
    |||||||||||| |||||||||||||||||| |  |||| ||   | || ||||||||| ||||||||||||||||||||||| |||||||    
T  20517723 aggatagttttcaggaccaccaataccaacaaatgatttgttgttattaacattatcaacaaatatcaaccattttgatgattcaacacaa 20517633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 6869512 - 6869563
Alignment:
Q  270 atcaaccattttgatgatttaacacaatcaggcttctttgtgaactcaatct 321  Q
    |||||||||| ||||||||| ||||||| ||||||||| |||||||||||||    
T  6869512 atcaaccattgtgatgatttgacacaattaggcttcttagtgaactcaatct 6869563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 20493716 - 20493629
Alignment:
Q  200 ttgcatactaggatagttttctggaccaccaataccaacacaaaatttattaatagcattatcaataaatatcaaccattttgatgat 287  Q
    ||||| || |||||| ||||| |||||||||||||||| ||||  |||   |||| ||||||||| |||||| |||||||||| ||||    
T  20493716 ttgcacaccaggataattttcaggaccaccaataccaatacaagcttttccaataacattatcaacaaatattaaccattttgttgat 20493629  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 2930680 - 2930616
Alignment:
Q  260 atcaataaatatcaaccattttgatgatttaacacaatcaggcttctttgtgaactcaatctcaa 324  Q
    ||||| ||| |||||||||||||||| || | ||||||||| ||| || |||||||| |||||||    
T  2930680 atcaacaaacatcaaccattttgatgcttcagcacaatcagcctttttagtgaactcgatctcaa 2930616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 20476126 - 20476090
Alignment:
Q  28 tcaagcaacagacttaataatttcatcttcataagaa 64  Q
    |||||||||||||||||||||| || |||||||||||    
T  20476126 tcaagcaacagacttaataattccagcttcataagaa 20476090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 24566774 - 24566710
Alignment:
Q  260 atcaataaatatcaaccattttgatgatttaacacaatcaggcttctttgtgaactcaatctcaa 324  Q
    ||||| ||| ||| ||||||| || |||||| | |||||||||||| | ||||||||||||||||    
T  24566774 atcaacaaacatcgaccatttcgacgatttagcgcaatcaggcttcgtagtgaactcaatctcaa 24566710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 13072245 - 13072350
Alignment:
Q  200 ttgcatactaggatagttttctggaccaccaataccaacacaaaatttattaatagcattatcaataaatatcaaccattttgatgatttaacacaatca 299  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||| | |||| ||||||||| |||||||||||||||||| |||| ||||||||||    
T  13072245 ttgcataccaggatagttttctggaccaccaataccaacacaagatttttgaataacattatcaacaaatatcaaccattttgaagattcaacacaatca 13072344  T
Q  300 ggcttc 305  Q
    ||||||    
T  13072345 ggcttc 13072350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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