View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21207_low_11 (Length: 357)
Name: NF21207_low_11
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 347
Target Start/End: Complemental strand, 10389465 - 10389139
Alignment:
| Q |
21 |
atcaatgcccttaaccannnnnnnatattcaattttaaaaatccctcagttataaattgaccagcataggtaccagtaattgtgctactttgaccagctg |
120 |
Q |
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| T |
10389465 |
atcaatgcccttaaccatttttttatattcaattttaaaaatccctcagttataaattgaccagcataggtaccagtaattgtgctactttgaccagctg |
10389366 |
T |
|
| Q |
121 |
ctaataaaccaataccccaaatatatagaattggaaagaaccctccaccatatttttcttcaagatattgtcctgcatttactaatcctatgtctttggc |
220 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10389365 |
ctaataaaccaataccccaaatataaagaattggaaagaaccctccaccatatttttcttcaagatattgtcctgcatttactaatcctatgtctttggc |
10389266 |
T |
|
| Q |
221 |
ttgttcagtatcatagaatactctagcaaaaacggttatcacaaataggtttattactaaggtgattaaaagtgctattgaggactcaattgagtagtaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10389265 |
ttgttcagtatcatagaatactctagcaaaaacggttatcacaaatagatttattactaaggtgattaatagtgctattgaggactcaattgagtagtaa |
10389166 |
T |
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| Q |
321 |
tttagagcctcttgaacttggcctttg |
347 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
10389165 |
tttagagcctcttgaacttggcctttg |
10389139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 5803445 - 5803524
Alignment:
| Q |
75 |
aattgaccagcataggtaccagtaattgtgctactttgaccagctgctaataaaccaataccccaaatatatagaattgg |
154 |
Q |
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| T |
5803445 |
aattgtccagcatatgtaccagtaatagtgctactttgaccagctgctaataacccaataccccatatatacaggattgg |
5803524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 47292228 - 47292086
Alignment:
| Q |
70 |
ttataaattgaccagcataggtaccagtaattgtgctactttgaccagctgctaataaaccaataccccaaatatatagaattggaaagaaccctccacc |
169 |
Q |
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|||| ||||| |||||||| || ||||| || ||||||||||| || || || | ||| ||||| ||||| ||||| ||||| || |||| ||||| || |
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| T |
47292228 |
ttatgaattgcccagcatatgtgccagtgatagtgctactttgtccggccgccagtaacccaattccccatatataaagaatagggaagagtcctcctcc |
47292129 |
T |
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| Q |
170 |
atatttttcttcaagatattgtcctgcatttactaatcctatg |
212 |
Q |
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|||||| || ||||||||||| ||||||||||||||||||||| |
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| T |
47292128 |
atatttctcctcaagatattgccctgcatttactaatcctatg |
47292086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 39674089 - 39674016
Alignment:
| Q |
72 |
ataaattgaccagcataggtaccagtaattgtgctactttgaccagctgctaataaaccaataccccaaatata |
145 |
Q |
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|||||||| |||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
39674089 |
ataaattgtccagcataagtaccagttatagtgctactttgaccagctgctaacaacccaataccccatatata |
39674016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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