View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21207_low_2 (Length: 499)

Name: NF21207_low_2
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21207_low_2
NF21207_low_2
[»] chr2 (2 HSPs)
chr2 (24-173)||(9615848-9615997)
chr2 (102-173)||(39808802-39808873)
[»] chr7 (5 HSPs)
chr7 (364-488)||(16166821-16166944)
chr7 (32-173)||(21267611-21267751)
chr7 (24-172)||(27274620-27274768)
chr7 (227-309)||(16166703-16166791)
chr7 (173-247)||(5721952-5722025)
[»] chr3 (4 HSPs)
chr3 (24-173)||(11985503-11985652)
chr3 (24-173)||(47649166-47649315)
chr3 (24-172)||(40605865-40606012)
chr3 (53-173)||(24481967-24482086)
[»] chr6 (1 HSPs)
chr6 (24-168)||(6719971-6720115)
[»] chr4 (2 HSPs)
chr4 (44-171)||(13441942-13442068)
chr4 (24-172)||(28450162-28450309)
[»] chr1 (3 HSPs)
chr1 (38-171)||(29773220-29773352)
chr1 (38-165)||(29773432-29773558)
chr1 (43-172)||(34870363-34870492)
[»] scaffold0081 (1 HSPs)
scaffold0081 (317-379)||(56726-56788)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 9615848 - 9615997
Alignment:
Q  24 gggttgaacccgcgaccctaggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaat 123  Q
    ||||||||||||||||||||| |||||| |||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  9615848 gggttgaacccgcgaccctagacaatttctggctcccccttaccactgcagcagcgaaatcttactgatatagtacacctattatacaatataagttaat 9615947  T
Q  124 cttggaggatactgtggctcctgccggccaccaaagagatccgccactga 173  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||||||    
T  9615948 cttgggggatactgtggctcccgctggccaccaaagagatccgccactga 9615997  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 39808873 - 39808802
Alignment:
Q  102 ctattatactatataagttaatcttggaggatactgtggctcctgccggccaccaaagagatccgccactga 173  Q
    ||||| |||||||||| ||| |||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  39808873 ctattgtactatataatttattcttgggggataccgtggctcccgccggccaccaaagagatccgccactga 39808802  T

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Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 364 - 488
Target Start/End: Original strand, 16166821 - 16166944
Alignment:
Q  364 tttccagaaatcataaccgttgcaattcctcgatctgtcacctgaccaatcaaccctattatttgctttcaacatttttacctttacattttcttcactc 463  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16166821 tttccagaaaccataaccgttgcaattcctcaatc-gtcacctgaccaatcaaccttattatttgctttcaacatttttacctttacattttcttcactc 16166919  T
Q  464 ttatttgaaaacatgtttctttcat 488  Q
    |||||||||||||||||||||||||    
T  16166920 ttatttgaaaacatgtttctttcat 16166944  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 21267751 - 21267611
Alignment:
Q  32 cccgcgaccctaggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaatcttggagg 131  Q
    ||||||||| |||||||||| ||||||||||| |||||||| |||||||||| || || ||||  || ||||||||||||||||||||||||||||| ||    
T  21267751 cccgcgaccttaggcaatttctggcacccctt-accactgcagcagcgaaatattgctaatattatatacctattatactatataagttaatcttggggg 21267653  T
Q  132 atactgtggctcctgccggccaccaaagagatccgccactga 173  Q
    |||| |||||||| |||||||||||||||||||| |||||||    
T  21267652 ataccgtggctcccgccggccaccaaagagatccaccactga 21267611  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 27274620 - 27274768
Alignment:
Q  24 gggttgaacccgcgaccctaggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaat 123  Q
    |||||||||||||||||||| ||||||| | ||||||| |||||| |||   || |||||||| || |||||||||| |||||||||||||||| |||||    
T  27274620 gggttgaacccgcgaccctaagcaatttctcgcacccccttaccattgcaatagtgaaatcttactaatatagtacatctattatactatataacttaat 27274719  T
Q  124 cttggaggatactgtggctcctgccggccaccaaagagatccgccactg 172  Q
    ||||| |||||| |||||||  |||| ||||||||||||||||||||||    
T  27274720 cttgggggataccgtggctctcgccgaccaccaaagagatccgccactg 27274768  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 16166703 - 16166791
Alignment:
Q  227 cttgaatgtctgattagaattatttcaattttaaa------tacaatcacatcatttacaacagtagtagaaacataaggaccattctt 309  Q
    |||||||||||| |||||||| ||||||||||| |      |||||||||||||||||||| |||||||||||||||||||||||||||    
T  16166703 cttgaatgtctgtttagaattgtttcaattttataatatggtacaatcacatcatttacaatagtagtagaaacataaggaccattctt 16166791  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 5721952 - 5722025
Alignment:
Q  173 agccacgttataacctttaaaagatctctatatggtgtgtgtggtaatatgtgtcttgaatgtctgattagaatt 247  Q
    ||||||||||||||||| |||| | |||||||| |||||| |||||||||||| |||||||| ||  ||||||||    
T  5721952 agccacgttataaccttgaaaaaacctctatat-gtgtgtctggtaatatgtgccttgaatgcctatttagaatt 5722025  T

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Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 11985503 - 11985652
Alignment:
Q  24 gggttgaacccgcgaccctaggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaat 123  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||| || | |||||||| |||||||| |||||||||||||    
T  11985503 gggttgaacccgcgaccctaggcaatttctggcacccccttaccacggcagcagcgaaatcttactaacatagtacatctattatagtatataagttaat 11985602  T
Q  124 cttggaggatactgtggctcctgccggccaccaaagagatccgccactga 173  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||||||||    
T  11985603 cttgggggataccgtggctcctgccgaccaccaaagagatccgccactga 11985652  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 47649166 - 47649315
Alignment:
Q  24 gggttgaacccgcgaccctaggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaat 123  Q
    |||||||||||||||||||||||||||| | ||||||| |||||||| | |||||||||| || |||||||| ||| |||||||||||||||||||||||    
T  47649166 gggttgaacccgcgaccctaggcaatttctagcacccccttaccactacagcagcgaaattttactgatatattactcctattatactatataagttaat 47649265  T
Q  124 cttggaggatactgtggctcctgccggccaccaaagagatccgccactga 173  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||| ||||    
T  47649266 cttgggggataccgtggctcccgccggccaccaaagagatccgcccctga 47649315  T

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Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 40605865 - 40606012
Alignment:
Q  24 gggttgaacccgcgaccctaggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaat 123  Q
    ||||||||||||| |||||||||||||| ||||||||||| | |||||| ||||||| ||||  || |||||||||| ||||||||||||||||||||||    
T  40605865 gggttgaacccgcaaccctaggcaatttctggcacccctt-atcactgcagcagcgagatctaactaatatagtacatctattatactatataagttaat 40605963  T
Q  124 cttggaggatactgtggctcctgccggccaccaaagagatccgccactg 172  Q
    ||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  40605964 cttgcgggatactgtggctcctgccagccaccaaagagatccgccactg 40606012  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 24481967 - 24482086
Alignment:
Q  53 tggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaatcttggaggatactgtggctcctgccggcc 152  Q
    |||||||||||| ||||||| ||| | ||||||| || ||||  |||| ||||||| ||||||||| ||||||||| |||||| |||||||| |||||||    
T  24481967 tggcaccccttt-ccactgcagcaacaaaatcttactaatattatacatctattatgctatataaggtaatcttgggggataccgtggctcccgccggcc 24482065  T
Q  153 accaaagagatccgccactga 173  Q
    |||||||||||||||||||||    
T  24482066 accaaagagatccgccactga 24482086  T

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Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 6719971 - 6720115
Alignment:
Q  24 gggttgaacccgcgaccctaggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaat 123  Q
    |||||||||||||||||||||||||||| ||||||||| | |||||||| |||  ||||| || || ||||| |||||||||||||||||||||||||||    
T  6719971 gggttgaacccgcgaccctaggcaatttctggcaccccctaaccactgcagcaatgaaattttactaatataatacacctattatactatataagttaat 6720070  T
Q  124 cttggaggatactgtggctcctgccggccaccaaagagatccgcc 168  Q
    ||||| |||||| |||||||| |||| ||| ||||||||||||||    
T  6720071 cttgggggataccgtggctcccgccgaccatcaaagagatccgcc 6720115  T

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Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 13442068 - 13441942
Alignment:
Q  44 ggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaatcttggaggatactgtggctc 143  Q
    |||||||| |||||||||||| ||||||| ||||||||||||| |||||||  |||| ||||||||||||||||| ||||||||| |||||| |||||||    
T  13442068 ggcaatttatggcaccccttt-ccactgcagcagcgaaatcttactgatattatacatctattatactatataagataatcttgggggataccgtggctc 13441970  T
Q  144 ctgccggccaccaaagagatccgccact 171  Q
    | ||||||||||||||||||||||||||    
T  13441969 ccgccggccaccaaagagatccgccact 13441942  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 28450162 - 28450309
Alignment:
Q  24 gggttgaacccgcgaccctaggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaat 123  Q
    |||||||| |||||||  | |||||||| ||||| |||||| ||||||| ||||  |||| || |||||||  |||| ||||||||||||||||| ||||    
T  28450162 gggttgaatccgcgacgttgggcaatttatggcatcccttt-ccactgcagcagtaaaattttactgatattatacatctattatactatataaggtaat 28450260  T
Q  124 cttggaggatactgtggctcctgccggccaccaaagagatccgccactg 172  Q
     |||||||||||  ||||||| ||| | |||||||||||||||||||||    
T  28450261 tttggaggataccatggctcccgcccgtcaccaaagagatccgccactg 28450309  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 29773352 - 29773220
Alignment:
Q  38 accctaggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaatcttggaggatactg 137  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||  |||| |||| || |||||||| |||||||||||||||||| |||||  |    
T  29773352 accctaggcaatttttggcacccctt-accactgcagcagcgaaatcttaatgatgtagtgcatctattatattatataagttaatcttgggggatatcg 29773254  T
Q  138 tggctcctgccggccaccaaagagatccgccact 171  Q
    ||||||| ||| ||||||||||||||||||||||    
T  29773253 tggctcccgccagccaccaaagagatccgccact 29773220  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 29773558 - 29773432
Alignment:
Q  38 accctaggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaatcttggaggatactg 137  Q
    |||||||||||||| ||||||||| |||||||||| |||| |||||||| ||||| ||||||| |||||||| |||||||||||||||||| ||||||      
T  29773558 accctaggcaatttatggcacccccttaccactgcagcagtgaaatcttactgatgtagtacatctattatattatataagttaatcttgg-ggatacct 29773460  T
Q  138 tggctcctgccggccaccaaagagatcc 165  Q
    ||||||| | || |||||||||||||||    
T  29773459 tggctcccgtcgaccaccaaagagatcc 29773432  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 34870492 - 34870363
Alignment:
Q  43 aggcaatttttggcacccctttaccactgctgcagcgaaatctttctgatatagtacacctattatactatataagttaatcttggaggatactgtggct 142  Q
    ||||||||| || |||||| || ||| ||| || |||||||||| || ||||| |||| | |||||| ||||||||  |||||||| ||||   ||||||    
T  34870492 aggcaatttatgacaccccctttccattgcagcggcgaaatcttactaatataatacatcaattatattatataaggaaatcttgggggatgtcgtggct 34870393  T
Q  143 cctgccggccaccaaagagatccgccactg 172  Q
    || | ||||||||||| |||||||||||||    
T  34870392 cccgtcggccaccaaatagatccgccactg 34870363  T

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Target: scaffold0081 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 56726 - 56788
Alignment:
Q  317 tcccaaatttcttcaacttatgcttcaagaaacattttcatcctaattttccagaaatcataa 379  Q
    ||||||||||||||| |||  ||||| ||| || || ||||||||||||||||||||||||||    
T  56726 tcccaaatttcttcaccttgggcttctagatacgttgtcatcctaattttccagaaatcataa 56788  T

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