View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21207_low_29 (Length: 227)
Name: NF21207_low_29
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 24856409 - 24856599
Alignment:
| Q |
19 |
actctaaaccctagaaattcaaattgcgaatgttcgttcctcttctacttctctcaaacctaacctaattttcaatcttcatcaatgggtagaccagaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24856409 |
actctaaaccctagaaattcaaattgcgaatgttcgttcctcttctacttctctcaaacctaacctaattttcaatcttcttcaatgggtagaccagaac |
24856508 |
T |
|
| Q |
119 |
cttgtgttctcttctctcacaccttcgttcattctcatctcgatgagtacgtcgacgaggtattcattcaattctcgaggatttcgattca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24856509 |
cttgtgttctcttctctcacaccttcgttcattctcatctcgatgagtacgtcgacgaggtattcattcaattctcacggatttcgattca |
24856599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University