View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21207_low_7 (Length: 396)
Name: NF21207_low_7
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21207_low_7 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 268
Target Start/End: Original strand, 7306745 - 7307007
Alignment:
| Q |
4 |
acccaaaaagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttaggaaaggtgatatatatg |
103 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7306745 |
acccaacaagcagaccaacccattgcatgaaccaataacttcactacaatccttgtcatgcaatagataataaggatccttaggaaaggtgatat----g |
7306840 |
T |
|
| Q |
104 |
acggttat--aacaaacgaccagctggaaaaggtacgaaacggtgcgggtaatagaatagcaaaaagtgggggtttcgtgcagatctattgaggtgcatt |
201 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
7306841 |
acggttatctaacaaacgaccagatggaaaaggtacgaaacggtgcgggtaatagaatagcgaaaagtgcgggtttcgtgcagatctattgaggtgcatt |
7306940 |
T |
|
| Q |
202 |
ttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaag |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7306941 |
ttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaag |
7307007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 172 - 368
Target Start/End: Complemental strand, 7327471 - 7327275
Alignment:
| Q |
172 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7327471 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcagaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatc |
7327372 |
T |
|
| Q |
272 |
ttactggaagccttgataagattttggccataacctcgtcggggagatctactgatggcggcagattggagtgagagcgaagacgctgcaagttcgg |
368 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||| |||||||| |||||| |||||||||| |
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| T |
7327371 |
ttactggaagccttgataagatttcggccataacctcgtcggggagtgtttctgacggcggcagattggattgagagcggagacgccgcaagttcgg |
7327275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 166 - 379
Target Start/End: Original strand, 7312036 - 7312249
Alignment:
| Q |
166 |
aagtgggggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatca |
265 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7312036 |
aagtgcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcagagataatagtgttccaagacttactcacacacttgatctgcatca |
7312135 |
T |
|
| Q |
266 |
aagatcttactggaagccttgataagattttggccataacctcgtcggggagatctactgatggcggcagattggagtgagagcgaagacgctgcaagtt |
365 |
Q |
| |
|
||| |||||||||||||| ||||||||||| ||| || ||||| ||| |||| ||||||||||||||||||||| |||||||| |||||| || |||| |
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| T |
7312136 |
aagttcttactggaagccatgataagatttcggcgatgacctcatcgaggagggttactgatggcggcagattggattgagagcggagacgccgcgagtt |
7312235 |
T |
|
| Q |
366 |
cggtggctgtgtat |
379 |
Q |
| |
|
||| ||||||||| |
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| T |
7312236 |
cggcagctgtgtat |
7312249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 7327654 - 7327521
Alignment:
| Q |
11 |
aagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttaggaaaggtgatatatatgacggtta |
110 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
7327654 |
aagcagaccaatccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttaggaaaggtgatat----gagggtta |
7327559 |
T |
|
| Q |
111 |
t--aacaaacgaccagctggaaaaggtacgaaacggtg |
146 |
Q |
| |
|
| || |||| |||||| |||||||||||||||||||| |
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| T |
7327558 |
tctaataaactaccagcaggaaaaggtacgaaacggtg |
7327521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 7311853 - 7311992
Alignment:
| Q |
5 |
cccaaaaagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttaggaaaggtgatatatatga |
104 |
Q |
| |
|
||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
7311853 |
cccaacaaacagaccaatccattgcaggaaccaataacttcacgacaatccttgtcatgcaacagataataaggatccttaggaaaggtg----atatga |
7311948 |
T |
|
| Q |
105 |
cggtta--taacaaacgaccagctggaaaaggtacgaaacggtg |
146 |
Q |
| |
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|||||| ||| ||| ||||||| |||||||||| ||||||||| |
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| T |
7311949 |
cggttatctaataaatgaccagcaggaaaaggtatgaaacggtg |
7311992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 20455776 - 20455701
Alignment:
| Q |
184 |
gatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatct |
259 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||| |||||| |||| || |||||||||||||| |||||||| |||| |
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| T |
20455776 |
gatctattaaggtgtattttgacgaatttagaatcggagataagggttttccaagacttacatacacacttcatct |
20455701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 20414147 - 20414072
Alignment:
| Q |
184 |
gatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatct |
259 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||| |||||| |||| || |||||||||||||| |||||||| |||| |
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| T |
20414147 |
gatctattaaggtgtattttgacaaatttagaatcggagataagggttttccaagacttacatacacacttcatct |
20414072 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 13888649 - 13888726
Alignment:
| Q |
11 |
aagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttagga |
88 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||| | |||||| |||||||| || |||||| |||||||||| |||| |
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|
| T |
13888649 |
aagcagaccaatccattgcaggaaccaacaacatgacgacagtccttgtcgatcagtagatagtaaggatcctcagga |
13888726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 20455971 - 20455894
Alignment:
| Q |
11 |
aagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttagga |
88 |
Q |
| |
|
||||| ||||| |||||||| |||||||||| || |||||||||||| |||| ||| ||| |||||||| |||||| |
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|
| T |
20455971 |
aagcaaaccaatccattgcaggaaccaataaatttacgacaatccttatcattcaactcatagtaaggatctttagga |
20455894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 20414342 - 20414302
Alignment:
| Q |
11 |
aagcagaccaacccattgcatgaaccaataacttcacgaca |
51 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||||||||| |
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|
| T |
20414342 |
aagcagaccaatccattgcaggaaccaacaacttcacgaca |
20414302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 22533935 - 22533863
Alignment:
| Q |
172 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttac |
244 |
Q |
| |
|
||||||| |||||| | ||| |||||||||||| |||||||||||| || ||||| || ||||| ||||||| |
|
|
| T |
22533935 |
gggtttcttgcagaccgattaaggtgcattttggcgaatttaggatcagagataatggttttccaggacttac |
22533863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 3417 - 3315
Alignment:
| Q |
193 |
aggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataaga |
292 |
Q |
| |
|
||||||||||||| ||||||||||||||| || | ||||||||||| | || ||| |||| ||||||||||| ||| | |||||||||| ||||| || |
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|
| T |
3417 |
aggtgcattttgacgaatttaggatcggagatgagagtgttccaagtatgacttacagacttcatctgcatcaatgatttgactggaagccatgatagga |
3318 |
T |
|
| Q |
293 |
ttt |
295 |
Q |
| |
|
||| |
|
|
| T |
3317 |
ttt |
3315 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 283
Target Start/End: Complemental strand, 24925 - 24814
Alignment:
| Q |
172 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatc |
271 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||| ||||| || || | ||| ||||| ||||||| || ||||| |||||||| | |||| |
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|
| T |
24925 |
gggtttcgtgcagatctactaaggtgcattttaatgaatgaaggattagagatgagagttttccatgacttactgacgcacttcatctgcataagagatt |
24826 |
T |
|
| Q |
272 |
ttactggaagcc |
283 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
24825 |
ttaccggaagcc |
24814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 317
Target Start/End: Complemental strand, 42297388 - 42297270
Alignment:
| Q |
199 |
attttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataagattttgg |
298 |
Q |
| |
|
||||||| ||||||||||| ||| || | |||||||||||| ||| ||||| || |||||||||| |||| | |||||||||| |||||| |||| || |
|
|
| T |
42297388 |
attttgacgaatttaggattggagattagagtgttccaagaaatacttacacatttcatctgcatcagagatttcactggaagccatgataatatttcgg |
42297289 |
T |
|
| Q |
299 |
ccataacctcgtcggggag |
317 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
42297288 |
tgataagctcgtcggggag |
42297270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 31443575 - 31443660
Alignment:
| Q |
11 |
aagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttaggaaaggtgat |
96 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||| || |||| ||||| ||| |||| |||| ||||||||||| |||| |||||| |
|
|
| T |
31443575 |
aagcagaccaatccattgcaggaaccaacaactccaggacagtccttctcaatcaattgatagtaaggatccttgggaagggtgat |
31443660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 2576156 - 2576076
Alignment:
| Q |
172 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacac |
252 |
Q |
| |
|
||||||||||| |||| || ||||| | ||| |||||||||||||| |||||||||| |||||||| || || |||||| |
|
|
| T |
2576156 |
gggtttcgtgccgatcgcttaaggtgaagtttaatgaatttaggatcagaaataatagatttccaagatttgcatacacac |
2576076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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