View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21207_low_9 (Length: 377)

Name: NF21207_low_9
Description: NF21207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21207_low_9
NF21207_low_9
[»] chr8 (2 HSPs)
chr8 (1-282)||(35523998-35524280)
chr8 (279-359)||(35524427-35524507)
[»] chr5 (1 HSPs)
chr5 (242-279)||(17358505-17358542)
[»] chr4 (1 HSPs)
chr4 (234-279)||(37538178-37538223)
[»] chr1 (3 HSPs)
chr1 (234-275)||(11711381-11711422)
chr1 (234-282)||(1281472-1281520)
chr1 (250-282)||(35120198-35120230)
[»] scaffold0229 (1 HSPs)
scaffold0229 (234-282)||(7480-7528)
[»] chr2 (1 HSPs)
chr2 (226-278)||(32402217-32402269)
[»] chr7 (2 HSPs)
chr7 (229-282)||(48888974-48889027)
chr7 (242-282)||(2590875-2590915)
[»] chr6 (1 HSPs)
chr6 (234-275)||(33781441-33781482)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 35523998 - 35524280
Alignment:
Q  1 atgacttgagctctagagaagagtccatctcaaaggacaagcctattgggtggaagaatcctatggctgaagtatcaattcattctctagctttactcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  35523998 atgacttgagctctagagaagagtccatcccaaaggacaagcctattgggtgggagaatcctatggcttaagtatcaattcattctctagctttactcaa 35524097  T
Q  101 agcggtgcacaatataagcctaagacaagcccatcgccttaccaaactaaatgtatatagaattacaac-tttatgtcaatcagtaacaagcattaactt 199  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35524098 tgtggtgcacaatataagcctaagacaagcccatcgccttaccaaactaaatgtatatagaattacaacttttatgtcaatcagtaacaagcattaactt 35524197  T
Q  200 caaggaacttaacgcattcattatataaaaagattttaatttttatacactgacagtgtaaagttattttacacatgcatcca 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35524198 caaggaacttaacgcattcattatataaaaagattttaatttttatacactgacagtgtaaagttactttacacatgcatcca 35524280  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 35524427 - 35524507
Alignment:
Q  279 tccaccacatgccaaagcaaacagcaattctagaaaaagaaccaattagtacctggggaggcttgaagggatagtcagtag 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35524427 tccaccacatgccaaagcaaacagcaattctagaaaaagaaccaattagtacctggggaggcttgaagggatagtcagtag 35524507  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 17358505 - 17358542
Alignment:
Q  242 ttatacactgacagtgtaaagttattttacacatgcat 279  Q
    |||||||||||| |||||||||||||||||||||||||    
T  17358505 ttatacactgacggtgtaaagttattttacacatgcat 17358542  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 37538223 - 37538178
Alignment:
Q  234 tttaatttttatacactgacagtgtaaagttattttacacatgcat 279  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||    
T  37538223 tttaattgctatacactgacagtgtaaagttatttcacacatgcat 37538178  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 11711422 - 11711381
Alignment:
Q  234 tttaatttttatacactgacagtgtaaagttattttacacat 275  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  11711422 tttaatttgtatacactgacagtgtaaagctattttacacat 11711381  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 1281520 - 1281472
Alignment:
Q  234 tttaatttttatacactgacagtgtaaagttattttacacatgcatcca 282  Q
    |||||||| |||||||| |||||||||| || |||||||||||||||||    
T  1281520 tttaatttgtatacacttacagtgtaaactttttttacacatgcatcca 1281472  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 35120230 - 35120198
Alignment:
Q  250 tgacagtgtaaagttattttacacatgcatcca 282  Q
    |||||||||||||||||||||||||||||||||    
T  35120230 tgacagtgtaaagttattttacacatgcatcca 35120198  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 7528 - 7480
Alignment:
Q  234 tttaatttttatacactgacagtgtaaagttattttacacatgcatcca 282  Q
    |||||||| |||||||| |||||||||| || |||||||||||||||||    
T  7528 tttaatttgtatacacttacagtgtaaactttttttacacatgcatcca 7480  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 32402217 - 32402269
Alignment:
Q  226 aaaaagattttaatttttatacactgacagtgtaaagttattttacacatgca 278  Q
    ||||||| |||||||  ||||||| ||||||||||| ||||||||||||||||    
T  32402217 aaaaagagtttaattactatacaccgacagtgtaaatttattttacacatgca 32402269  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 48889027 - 48888974
Alignment:
Q  229 aagattttaatttttatacactgacagtgtaaagttattttacacatgcatcca 282  Q
    |||| |||||||||||||||||  | |||||||  |||||||||||||||||||    
T  48889027 aagaatttaatttttatacactagccgtgtaaaactattttacacatgcatcca 48888974  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 2590875 - 2590915
Alignment:
Q  242 ttatacactgacagtgtaaagttattttacacatgcatcca 282  Q
    ||||| ||||||| ||||||||||||||||||||| |||||    
T  2590875 ttataaactgacattgtaaagttattttacacatgtatcca 2590915  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 33781441 - 33781482
Alignment:
Q  234 tttaatttttatacactgacagtgtaaagttattttacacat 275  Q
    |||||||| ||||||||||||||||||| ||| |||||||||    
T  33781441 tttaatttctatacactgacagtgtaaatttaatttacacat 33781482  T

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