View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21208_high_2 (Length: 280)
Name: NF21208_high_2
Description: NF21208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21208_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 8974264 - 8974016
Alignment:
| Q |
18 |
aaaagttgtgatagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccat |
117 |
Q |
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| T |
8974264 |
aaaagttgtgatagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaaaaagagttccat |
8974165 |
T |
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| Q |
118 |
tcttgtcttcacagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaa |
217 |
Q |
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| T |
8974164 |
tcttgtcttcacagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaa |
8974065 |
T |
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| Q |
218 |
gtttcctagataaaaagataagccagagagtgagactccattaccaagt |
266 |
Q |
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| T |
8974064 |
gtttcctagataaaaagataagccagagagtgagactccattaccaagt |
8974016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 266
Target Start/End: Complemental strand, 8962860 - 8962620
Alignment:
| Q |
26 |
tgatagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtct |
125 |
Q |
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| T |
8962860 |
tgatagatcatcttgtgttgtgtttgatataaaaatagctcctacaacttctgctttaaccacattataaatttgattagaaagactttcattcttgtct |
8962761 |
T |
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| Q |
126 |
tcacagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttccta |
225 |
Q |
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| T |
8962760 |
tcacaaaccacaatctcgctcttcactctgattagttctgtaaaattgtcacacatacctttgaaaacaatgggaatattactagcagagaagtttccta |
8962661 |
T |
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| Q |
226 |
gataaaaagataagccagagagtgagactccattaccaagt |
266 |
Q |
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| T |
8962660 |
tataggaagagaagccggtgagtgagactccattaccaagt |
8962620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 8946351 - 8946470
Alignment:
| Q |
147 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
246 |
Q |
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| T |
8946351 |
ttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
8946450 |
T |
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| Q |
247 |
gtgagactccattaccaagt |
266 |
Q |
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| T |
8946451 |
gtgagactccattaccaagt |
8946470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 266
Target Start/End: Original strand, 21687400 - 21687618
Alignment:
| Q |
48 |
tttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttt |
147 |
Q |
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| T |
21687400 |
tttgatataaaaacacctccaacaacttttgctttatacacattaaacatttgttcatgaagagtttcattattgccttcacaaaccacaatctttctct |
21687499 |
T |
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| Q |
148 |
tcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagagag |
247 |
Q |
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||||| || ||| || | ||| |||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| || |||| ||| |
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| T |
21687500 |
tcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttcctagatagaaagacaaaccagtgag |
21687599 |
T |
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| Q |
248 |
tgagactccattaccaagt |
266 |
Q |
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||||||||||||||||||| |
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| T |
21687600 |
tgagactccattaccaagt |
21687618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 34963079 - 34963123
Alignment:
| Q |
110 |
agttccattcttgtcttcacagacaacaatcttacttttcacttt |
154 |
Q |
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| T |
34963079 |
agttccattcttgtcttcacacactataatcttgcttttcacttt |
34963123 |
T |
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