View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21208_high_3 (Length: 253)
Name: NF21208_high_3
Description: NF21208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21208_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 8418573 - 8418796
Alignment:
| Q |
13 |
aatatgtcctaaattccacataatttgctatgaaaacactcctctgatgaaaatcaatccttgtgatgaaaaaatgacgaaaacgtgatgattcagaacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8418573 |
aatatgtcctaaattccacataatttgctatgaaaacactcctctgatgaaaatcaatccttgtgatgaaaaaatgacgaaaacttgatgattcagaacc |
8418672 |
T |
|
| Q |
113 |
aggaactagatcatgtacatgccatgccagtgcaacagaattgcgtcgtaaatcaatgggcactcttcaaagaaataagtatggagctaatttgaaaacc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8418673 |
aggaactagatcatgtacatgccatgccagtgcaacagaattgcgtcgtaaatcaatggacactcttcaaagaaataagtatggagctaatttgaaaacc |
8418772 |
T |
|
| Q |
213 |
ataagcattttccgggtcaattac |
236 |
Q |
| |
|
|| |||||||||| |||||||||| |
|
|
| T |
8418773 |
atcagcattttccaggtcaattac |
8418796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 8480253 - 8480179
Alignment:
| Q |
37 |
ttgctatgaaaaca-ctcctctgatgaaaatcaatccttgtgatgaaaaaatgacgaaaacgtgatgattcagaac |
111 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||||||||||||||||||| || ||||||||||| || |||||| |
|
|
| T |
8480253 |
ttgctatgaaaacaactactctgatgaaaacgaatccttgtgatgaaaaaa-gatgaaaacgtgataatgcagaac |
8480179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University