View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21208_low_1 (Length: 401)
Name: NF21208_low_1
Description: NF21208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21208_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 14625595 - 14625984
Alignment:
| Q |
1 |
ttgtttcacctctgacaattctaaatccagattccaacccaacatcattgtcatcttctttccttccttccacggtggctggtccaacaacaaccaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14625595 |
ttgtttcacctctgacaattctaaatccagattccgacccaacatcattgtcatcttctttccttccttccacggtggctggtccaacaacaaccaaaac |
14625694 |
T |
|
| Q |
101 |
cactgattggctttatttgatttgatttattaattattaacaaaagaataaagaagcttatgaggggtgtttggtggtgtcggaggaacgtggaagaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14625695 |
cactgattggctttatttgatttgatttattaattattaacaaaagaataaagaagcttatgaggggtgtttggtggtgtcggaggaacgtggaagaaag |
14625794 |
T |
|
| Q |
201 |
tgaaggaggatgaattttccgactgaagaatggtcttacagagaagcaggatctttgtgttgtgttgtgagaagaagaagaaagttgggaaatgaaagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14625795 |
tgaaggaggatgaattttccgactgaagaatggtcttacagagaagcaggatctttgtgttgtgttgtgagaagaagaagaaagttgggaaatgaaagat |
14625894 |
T |
|
| Q |
301 |
cgtaaaagaggaggaagaagtgggaattagggattggaatcactatgaaatgggttgaatttatggatcgggtcttattttacccatttt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14625895 |
cgtaaaagaggaggaagaagtgggaattagggattggaatcactatgaaatgggttgaatctatggatcgggtcttattttacccatttt |
14625984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 18106899 - 18106850
Alignment:
| Q |
47 |
attgtcatcttctttccttccttccacggtggctggtccaacaacaacca |
96 |
Q |
| |
|
|||||||||||| |||||||||| || || |||||||||||||||||||| |
|
|
| T |
18106899 |
attgtcatcttccttccttcctttcatggcggctggtccaacaacaacca |
18106850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University