View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21208_low_5 (Length: 244)
Name: NF21208_low_5
Description: NF21208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21208_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 2239484 - 2239264
Alignment:
| Q |
17 |
caataacgatgtaccaaaagataacaatgtagcagtgcttcgaccaaacatggcttgcgctattcgccctccttctagtctcccacatggtaacaagttc |
116 |
Q |
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| T |
2239484 |
caataacgatgtaccaaaagataacaatgtcgcagtgcttcgaccaaacatggcttgcgctattcgccctccttctagtctcccacatggtaacaagttc |
2239385 |
T |
|
| Q |
117 |
aaagaagtcaccaccatccctacacaagtatcaaattgttcgccaatgttatatctacaatgatgttttccaacgaataaataga----ataacaaaagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2239384 |
aaagaagtcaccaccatccctacacaagtatcaaattgttcgccgatgttatatctacaatgatgttttccaacgaataaatagaatacataacaaaagt |
2239285 |
T |
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| Q |
213 |
ttactgttatcattcacctat |
233 |
Q |
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|||||| |||||||||||||| |
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| T |
2239284 |
ttactgctatcattcacctat |
2239264 |
T |
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