View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21208_low_6 (Length: 236)
Name: NF21208_low_6
Description: NF21208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21208_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 1464025 - 1464182
Alignment:
| Q |
29 |
aatatcttggaaaacaaggtaggttattttccttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgac |
128 |
Q |
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| T |
1464025 |
aatatcttggaaaacaaggtaggttattttctttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgac |
1464124 |
T |
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| Q |
129 |
ttatgttcaaatattggaaataacctatctgtttgcagggataaggccgcgtacatat |
186 |
Q |
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| T |
1464125 |
ttatgttcaaatattggaaataacctatctgtttgcagggataaggccgcgtacatat |
1464182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 26791741 - 26791884
Alignment:
| Q |
29 |
aatatcttggaaaacaaggtaggttattt--tccttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcg |
126 |
Q |
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| T |
26791741 |
aatattttggaaaacaaggtagattttttatttattttcgctttatcatttggtcac---gttgataaggacgagccttggcgcaactctaaggttgttc |
26791837 |
T |
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| Q |
127 |
acttatgttcaaatattggaaataacctatctgtttgcagggataaggc |
175 |
Q |
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| T |
26791838 |
ac--atgttcaaatattggaaatagtatatctgcttgtagggataaggc |
26791884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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