View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21209_high_6 (Length: 304)
Name: NF21209_high_6
Description: NF21209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21209_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 27571340 - 27571620
Alignment:
| Q |
13 |
aaaatacattcattggttaattggtttgtttcagacccttagcaactgtatatacactattccttgagttctcaaagcaacacaaatcttttccattctg |
112 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27571340 |
aaaatacattcattggttaattggtttgtttgagacccttagcaactatatatacactattccttgagttctcaaagcaacacaaatcttttccattctg |
27571439 |
T |
|
| Q |
113 |
agttataaaaactcaaatatttctttctcatccaatcctctgccatcatcagta-nnnnnnnngtgaggaaccataaataataaaaacaatgggtttccg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
27571440 |
agttataaaaactcaaatatttctttctcatccaatcctctgccatcatcagtatttttttttgtgaggaaccataaatactaaaaacaatgggtttccg |
27571539 |
T |
|
| Q |
212 |
catagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatct |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
27571540 |
catagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaagggacttgaagtcccaaaaggctatct |
27571620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 27419487 - 27419214
Alignment:
| Q |
17 |
tacattcattggttaattggtttgtttcagacccttagcaactgtatatacactattccttgagttctcaaagcaacacaaatcttttccattctgagtt |
116 |
Q |
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|||||||| || ||||||||||||| || ||||||| |||| |||||||| ||||||||| |||||||| ||||| ||||||||| |||||||| || |
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| T |
27419487 |
tacattcactgattaattggtttgtag-aggcccttagaaactatatatacattattccttggattctcaaatcaacataaatcttttgcattctgaatt |
27419389 |
T |
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| Q |
117 |
ataaaaactcaaatatttctttctcatccaatcctctgccatcatcagtannnnnnnngtgaggaaccataaataataaaaacaatgggtttccgcatag |
216 |
Q |
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| T |
27419388 |
ataagaattcaaatatttctttctcatccaatcctctgccatcatcagtatcttttt-gtgaggagccatacataataaaaacaatgggtttccgcatag |
27419290 |
T |
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| Q |
217 |
caaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
27419289 |
caaagcttatcagaatgccatcattttccaaaacacaagagactgccaagggacttgaagtcccaaaaggctatct |
27419214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 27411690 - 27411599
Alignment:
| Q |
201 |
atgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatct |
292 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27411690 |
atgggtttccgcatagcaaagcttattagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatct |
27411599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 27422176 - 27422078
Alignment:
| Q |
194 |
aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatct |
292 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||||| |
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| T |
27422176 |
aaaaacaatgggtttccgcatagcaaaacttatcagaatgccatcattttcctcaacgcaagcatctaccaagggatttgaagtcccaaaaggctatct |
27422078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 27414550 - 27414445
Alignment:
| Q |
189 |
ataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggct |
288 |
Q |
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|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||| ||||||| |||||||||| |
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| T |
27414550 |
ataaaaaaaacaatgggtttccgcatagcaaagcttatcagaaagccatcattttcgtcaacacaagcatctagcaagggatttgaagtgccaaaaggct |
27414451 |
T |
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| Q |
289 |
atcttg |
294 |
Q |
| |
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|||||| |
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| T |
27414450 |
atcttg |
27414445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 27424755 - 27424657
Alignment:
| Q |
194 |
aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||| | |||||||||||||||||||| |
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| T |
27424755 |
aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttcgtcaacacaagcatctagtaaaggattcgaagtcccaaaaggctatct |
27424657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 27567154 - 27567252
Alignment:
| Q |
194 |
aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatct |
292 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||| || | |||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||| |
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| T |
27567154 |
aaaaacaatgggtttccgtatagccagtattatcaaaagggcatcattttccaaaactcaaggatctagcaagggatttgaagtcccaaaaggctatct |
27567252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 27422341 - 27422210
Alignment:
| Q |
13 |
aaaatacattcattggttaattggtttgtttcagacccttagcaactgtatatacactattccttgagttctcaaagcaacacaaatcttttccattctg |
112 |
Q |
| |
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||||||| |||||||| |||||||||||| || |||||||||||| | ||||||||| || ||| || ||||| | ||||||| |||||| ||| | |
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| T |
27422341 |
aaaatactttcattggctaattggtttgtag-agtcccttagcaactatttatacactactctttgggt-ctcaa-gtaacacaagtcttttgcatcata |
27422245 |
T |
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| Q |
113 |
agttataaaaactcaaatatttctttctcatccaa |
147 |
Q |
| |
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| |||| | || ||||||||||||||||||||||| |
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| T |
27422244 |
aattatcagaattcaaatatttctttctcatccaa |
27422210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 27567089 - 27567130
Alignment:
| Q |
125 |
tcaaatatttctttctcatccaatcctctgccatcatcagta |
166 |
Q |
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| T |
27567089 |
tcaaatatttctttctcatccaatcctctaacataatcagta |
27567130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 27414661 - 27414562
Alignment:
| Q |
48 |
cccttagcaactgtatatacac-tattccttgagttctcaaagcaacacaaatcttttccattctgagttataaaaactcaaatatttctttctcatcca |
146 |
Q |
| |
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||||| |||||| ||||||||| ||||| ||| |||||||| ||||||||| |||||| ||| || | |||| | || ||||||| ||||||||||||| |
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| T |
27414661 |
cccttggcaactatatatacacctattcattgtgttctcaa-gcaacacaagtcttttgcatcctaaattatcataattcaaataaatctttctcatcca |
27414563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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