View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21209_low_1 (Length: 757)
Name: NF21209_low_1
Description: NF21209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21209_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 713; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 12 - 740
Target Start/End: Original strand, 22571144 - 22571871
Alignment:
| Q |
12 |
atgaatgcaaggatgagaaaattacctgtaattcttctggtaggatcaattgtcaacattttatcgacaagatcaatggctaagggatgaacatggggga |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571144 |
atgaatgcaaggatgagaaaattacctgtaattcttctggtaggatcaattgtcaacattttatcgacaagatcaatggctaagggatgaacatggggga |
22571243 |
T |
|
| Q |
112 |
aaaccctattcaaaggttgacgaggatactgaggaagttgtcggatatatcttctcgcatcgtcattttttactaaccccacatcagcgtcagttggagt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571244 |
aaaccctattcaaaggttgacgaggatactgaggaagttgtcggatatatcttctcgcatcgtcattttttactaaccccacatcagcgtcagttggagt |
22571343 |
T |
|
| Q |
212 |
gccaagaagctgtagaaaaacaacaagtgtaaacaattaagcatatatgatatattactacttttatgattaaactattgattgtattcaaggcattaat |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571344 |
gccaagaagctgtagaaaaacaacaagtgtaagcaattaagcatatatgatatattactacttttatgattaaactattgattgtattcaaggcattaat |
22571443 |
T |
|
| Q |
312 |
aatgaaatatttatatgaatatcaacttatatgagtaagtagcaactagagaaaacatttagtgtaatgttttactccatccgccacattataagtgtcg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571444 |
aatgaaatatttatatgaatatcaacttatatgagtaagtagcaactagagaaaacatttagtgtaatgttttactccatccgccacattataagtgtcg |
22571543 |
T |
|
| Q |
412 |
tttaagataatgcaaattttttaagaaaatgattagttatgctgattcgtatagtcttacctctgtcaataagcgcatttgatgcacatgatctttgcca |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571544 |
tttaagataatgcaaattttttaagaaaatgattagttatgctgattcctatagtcttacctctgtcaataagcgcatttgatgcacatgatctttgcca |
22571643 |
T |
|
| Q |
512 |
ggaaacagaggctttttattcataagctccataaaaatgcaaccaacagaccagacatctattgcagaggtgtaatctgaggagttcaacaacaattcag |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22571644 |
ggaaacagaggctttttattcataagctccataaaaatgcaacc-acagaccagacatctattgcagaggtgtaatctgaggagttcaacaacaattcag |
22571742 |
T |
|
| Q |
612 |
gagccctataccatctcgtgacaacatattctgtcatgaagtcactttccatagttggtcgcgcaagaccaaaatcaataatcttcaagtcgcaatttgc |
711 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571743 |
gagccctataccatctcgtgacaacatattctgtcatgaagtcactttccatagttggtcgcgcaagaccaaaatcaataatcttcaagtcgcaatttgc |
22571842 |
T |
|
| Q |
712 |
atttaacagcaggttgcttggtttcaaat |
740 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
22571843 |
atttaacagcaggttgcttggtttcaaat |
22571871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 491 - 576
Target Start/End: Complemental strand, 34418778 - 34418693
Alignment:
| Q |
491 |
tgatgcacatgatctttgccaggaaacagaggctttttattcataagctccataaaaatgcaaccaacagaccagacatctattgc |
576 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||||| || ||| || ||||| ||||| |||||||||||||| ||||| ||||| |
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|
| T |
34418778 |
tgatgcacgtgatctctgccaggaaacaaaggctttcgatccatcagttccatgaaaatacaaccaacagaccatacatcaattgc |
34418693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 654
Target Start/End: Complemental strand, 22664528 - 22664371
Alignment:
| Q |
497 |
acatgatctttgccaggaaacagaggctttttattcataagctccataaaaatgcaaccaacagaccagacatctattgcagaggtgtaatctgaggagt |
596 |
Q |
| |
|
|||| |||||| |||||||||||||||| | | || | |||||| |||||||||||||| ||||| ||||| || |||| || || ||||| ||| |
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| T |
22664528 |
acataatctttaccaggaaacagaggctcccttctaattatctccatcaaaatgcaaccaaccgaccatacatcaatagcagcagtatattctgaacagt |
22664429 |
T |
|
| Q |
597 |
tcaacaacaattcaggagccctataccatctcgtgacaacatattctgtcatgaagtc |
654 |
Q |
| |
|
||| | ||||||||| || |||||||| | || |||||||| |||||||||||||| |
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|
| T |
22664428 |
tcagtagcaattcaggggctctataccaacgagtcacaacatactctgtcatgaagtc |
22664371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 654
Target Start/End: Complemental strand, 22669007 - 22668850
Alignment:
| Q |
497 |
acatgatctttgccaggaaacagaggctttttattcataagctccataaaaatgcaaccaacagaccagacatctattgcagaggtgtaatctgaggagt |
596 |
Q |
| |
|
|||| |||||| |||||||||||||||| | | || | |||||| |||||||||||||| ||||| ||||| || |||| || || ||||| ||| |
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| T |
22669007 |
acataatctttaccaggaaacagaggctcccttctaattatctccatcaaaatgcaaccaaccgaccatacatcaatagcagcagtatattctgaacagt |
22668908 |
T |
|
| Q |
597 |
tcaacaacaattcaggagccctataccatctcgtgacaacatattctgtcatgaagtc |
654 |
Q |
| |
|
||| | ||||||||| || |||||||| | || |||||||| |||||||||||||| |
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|
| T |
22668907 |
tcagtagcaattcaggggctctataccaacgagtcacaacatactctgtcatgaagtc |
22668850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 591
Target Start/End: Complemental strand, 2608326 - 2608283
Alignment:
| Q |
548 |
atgcaaccaacagaccagacatctattgcagaggtgtaatctga |
591 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||||| |
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|
| T |
2608326 |
atgcaaccaacagaccagacatcaattgcagatgtgtactctga |
2608283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 35101648 - 35101594
Alignment:
| Q |
398 |
cattataagtgtcgtttaagataatgcaaattttttaagaaaatgattagttatg |
452 |
Q |
| |
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|||| ||||||| ||||||| ||||||| | ||||||||||||||||||||||| |
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|
| T |
35101648 |
cattgtaagtgttgtttaagttaatgcacgtattttaagaaaatgattagttatg |
35101594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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