View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21209_low_3 (Length: 457)
Name: NF21209_low_3
Description: NF21209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21209_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 47 - 442
Target Start/End: Original strand, 36276406 - 36276802
Alignment:
| Q |
47 |
gagtaggcaaatgttagtaagttagtggttacattagttttcagggatttcactttggactacactggtgtctgttagctcaccaaccaaactatctatg |
146 |
Q |
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| T |
36276406 |
gagtaggcaaatgttagtaagttagtggttacattagttttcagggatttcactttggactacactggtgtctgttagctcaccaaccaaactacctacg |
36276505 |
T |
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| Q |
147 |
tgggacttgaatannnnnnngttgctatataattctttcatttgatgcaggataggatatagcatgattgcagatgctgaggagaaaggactcattagac |
246 |
Q |
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| T |
36276506 |
tgggacttgaatatttttttgttgctatataattctttcatttgatgcaggataggatatagcatgattgcagatgctgaggagaaaggactcattagac |
36276605 |
T |
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| Q |
247 |
cgcaagaagttagttttccttgatatttaattcatgatgtacatactctt-cacattgcattaaagcttccttctattactcttttgaccaactttagta |
345 |
Q |
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| T |
36276606 |
cgcaagaagttagttttccttgatatttaattcatgatgtacatactcttacacattgcattaaagcttccttctattactcttttgaccaactttagta |
36276705 |
T |
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| Q |
346 |
gccgcattaagaataacgtcattcaatttaaattgagagtcattatcactctcaaattttaaatcgtttacttagattggttttgtgtggtacttag |
442 |
Q |
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| T |
36276706 |
gccgcattaagaataacgtcattcaatttaaattgagagtcattatcactctcaaattttaaatcgtatacttagattggttttgtgtggtacttag |
36276802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 3523120 - 3523156
Alignment:
| Q |
50 |
taggcaaatgttagtaagttagtggttacattagttt |
86 |
Q |
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| T |
3523120 |
taggcaaatcttagtaagttagtggttacattagttt |
3523156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 40114961 - 40114925
Alignment:
| Q |
55 |
aaatgttagtaagttagtggttacattagttttcagg |
91 |
Q |
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| T |
40114961 |
aaatgttagtaagttagtagttacgttagttttcagg |
40114925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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