View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21209_low_4 (Length: 332)
Name: NF21209_low_4
Description: NF21209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21209_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 489165 - 488859
Alignment:
| Q |
9 |
aggagcagagaagagacagtccttagttgggagagcataggtttcacatctaaggatggtaccatcaggcaaagctagtttcttgagaaggtcaaaattg |
108 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
489165 |
aggatcagaaaagagacagtccttagttgggagagcataggtttcacatctaaggatggtaccatcaggcaaagctagtttcttgagaaggtcaaaattg |
489066 |
T |
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| Q |
109 |
tgatttccaacggtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatccc |
208 |
Q |
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| T |
489065 |
tgatttccaacagtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatccc |
488966 |
T |
|
| Q |
209 |
aatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccatatgg |
308 |
Q |
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| T |
488965 |
aatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccatatgg |
488866 |
T |
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| Q |
309 |
gtcagtg |
315 |
Q |
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| T |
488865 |
gtcagtg |
488859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 133 - 313
Target Start/End: Original strand, 34697039 - 34697219
Alignment:
| Q |
133 |
taaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatcccaatctggttggatgaaatttccca |
232 |
Q |
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| T |
34697039 |
taaattggtccaccagagacagctctagaggcagcatgaaattcagcacaagggtgagtggattgaaacatgtcccaatctgggtgaatgaaatttccca |
34697138 |
T |
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| Q |
233 |
tccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccatatgggtcag |
313 |
Q |
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| T |
34697139 |
tccataaactgttataggcacaatgtaccatgtgacaaccttggagccaatatgtaccatttggatcaccagatggatcag |
34697219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 43637766 - 43637959
Alignment:
| Q |
106 |
ttgtgatttccaacggtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatat |
205 |
Q |
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| T |
43637766 |
ttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagattggaacatgt |
43637865 |
T |
|
| Q |
206 |
cccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatc |
299 |
Q |
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| T |
43637866 |
cccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccatttggatc |
43637959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 43976035 - 43975962
Alignment:
| Q |
193 |
gattgaaacatatcccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtg |
266 |
Q |
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||||||||||| |||||||| ||||| || | | ||||||||||||||||||||| | |||||| | |||||| |
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| T |
43976035 |
gattgaaacatgtcccaatcaggttgaatcatttgtcccatccataagctattgtaggaacaatgaatcatgtg |
43975962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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