View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21209_low_7 (Length: 293)
Name: NF21209_low_7
Description: NF21209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21209_low_7 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 41447495 - 41447204
Alignment:
| Q |
12 |
agaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagaggaattactcaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41447495 |
agaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagtggaattactcaac |
41447396 |
T |
|
| Q |
112 |
ttaacaaatcattataaaccactatgaagctctgacacaacctggacatgtcgacaccctaatgtaaaaaacacaaga----aatttttct-------gt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || | |
|
|
| T |
41447395 |
ttaacaaatcattataaaccactatgaagctctgacacaacctggacatgtcgacaccctaatgtaaaaaacacaagacaacgacattgctacactacat |
41447296 |
T |
|
| Q |
201 |
tgattttaatcaaaataagatatatatctattacaaacatgttgatttttctgnnnnnnnatttatctacacctcaagggatgcagcgacaac |
293 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41447295 |
atatattaatcaaaataagatatatatctattacaaacatgttgatttttctg-ttttttatttatctacacctcaagggatgcagcgacaac |
41447204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 41457681 - 41457552
Alignment:
| Q |
12 |
agaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagaggaattactcaac |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
41457681 |
agaaggtaaaggaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactcttacatgaattactcaac |
41457582 |
T |
|
| Q |
112 |
ttaacaaatcattataaaccactatgaagc |
141 |
Q |
| |
|
||||||| |||| |||||| |||||||||| |
|
|
| T |
41457581 |
ttaacaagtcatgataaacaactatgaagc |
41457552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 41457475 - 41457430
Alignment:
| Q |
206 |
ttaatcaaaataagatatatatctattacaaacatgttgatttttctg |
253 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
41457475 |
ttaatcaaaataagatatat--ctattacacacatgttgatttttctg |
41457430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 16418974 - 16419100
Alignment:
| Q |
12 |
agaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagaggaattactcaac |
111 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
16418974 |
agaaggtaaaggtggaatgatcaaac---ttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactcttacatgaattactcaac |
16419070 |
T |
|
| Q |
112 |
ttaacaaatcattataaaccactatgaagc |
141 |
Q |
| |
|
||||||| ||||||||||| ||||| |||| |
|
|
| T |
16419071 |
ttaacaagtcattataaacaactatcaagc |
16419100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University