View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21209_low_8 (Length: 289)
Name: NF21209_low_8
Description: NF21209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21209_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 488850 - 488556
Alignment:
| Q |
13 |
atcatcacctgtttttcaatccaaggaaaattcaattaactaaattatttttatatcatatgttgctagcaaatatttca-------------------t |
93 |
Q |
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| T |
488850 |
atcatcacctgtttttcaatccaaggaaaattcaattaactaaatcatttttatatcatatgttgctagcaaatatttcaaagagtttagtcacaatcat |
488751 |
T |
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| Q |
94 |
tcatatatatgtgcaaaaagtatttgtgattgaaataagatgtttttaatgatttgatgattatgaatgattgtcagtataaaaatatttacacaaataa |
193 |
Q |
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| T |
488750 |
tcatatatatgtgcaaaaagtatttgtgattgaaataagatgtttttaatgatcggatgattatgaatgattgtcagtataaaaatatttacacaaataa |
488651 |
T |
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| Q |
194 |
tgtatttggttcaaattgtgaagtgaatttcttaattagaatctctcagaacaatgcgaaagaacagaacacgtgtaatactactggttaaggtt |
288 |
Q |
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| T |
488650 |
tgtatttggttcaaattgcaaagtgaatttcttaattagaatctctcagaacaatgcgaaataacagaacacgtgtaatactactagttaaggtt |
488556 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 5076462 - 5076499
Alignment:
| Q |
129 |
taagatgtttttaatgatttgatgattatgaatgattg |
166 |
Q |
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| T |
5076462 |
taagatgttattaatgatttgatgattatgattgattg |
5076499 |
T |
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