View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2120R-Insertion-1 (Length: 1070)

Name: NF2120R-Insertion-1
Description: NF2120R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2120R-Insertion-1
NF2120R-Insertion-1
[»] chr4 (2 HSPs)
chr4 (407-932)||(22415637-22416158)
chr4 (308-348)||(6686491-6686531)
[»] chr8 (5 HSPs)
chr8 (9-157)||(44312949-44313098)
chr8 (9-157)||(44316754-44316903)
chr8 (241-356)||(44317001-44317116)
chr8 (241-356)||(44313196-44313304)
chr8 (241-342)||(9339290-9339391)
[»] scaffold0200 (2 HSPs)
scaffold0200 (9-162)||(29221-29375)
scaffold0200 (241-356)||(29468-29583)
[»] chr6 (4 HSPs)
chr6 (9-162)||(34099796-34099950)
chr6 (9-162)||(34096163-34096317)
chr6 (241-356)||(34099588-34099703)
chr6 (241-356)||(34095954-34096069)
[»] chr2 (3 HSPs)
chr2 (9-162)||(21610956-21611110)
chr2 (241-356)||(21610748-21610863)
chr2 (293-350)||(19429882-19429939)
[»] scaffold0086 (2 HSPs)
scaffold0086 (241-356)||(37451-37566)
scaffold0086 (241-356)||(41228-41343)
[»] chr1 (3 HSPs)
chr1 (241-356)||(22067646-22067761)
chr1 (261-353)||(22068151-22068243)
chr1 (240-353)||(4673383-4673495)
[»] chr3 (4 HSPs)
chr3 (241-353)||(21144154-21144266)
chr3 (246-333)||(21145399-21145486)
chr3 (245-348)||(4167774-4167876)
chr3 (74-156)||(21144372-21144455)
[»] chr7 (1 HSPs)
chr7 (99-158)||(3333671-3333731)


Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 407 - 932
Target Start/End: Complemental strand, 22416158 - 22415637
Alignment:
Q  407 cactttcttgagttaatgtcttccattcatcacacatcaataatccttcctgtaattcaaagtgtattagcataacattgtaattaaaacagatgcatta 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22416158 cactttcttgagttaatgtcttccattcatcacacatcaataatccttcctgtaattcaaagtgtattagcataacattgtaattaaaacacatgcatta 22416059  T
Q  507 atcatatttaaggac-tgcaatttcttgaaaaagatgcattatcaacataaataaatacatgttgtacattacattataaagttaaatacagaccttccc 605  Q
    |||||||| ||| || ||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||||||||||||||||||||||||||    
T  22416058 atcatattgaagaacatgcaatttcttgaaaaagatgcattatcaacataaata----catggtgtacattacattataaagttaaatacagaccttccc 22415963  T
Q  606 attgtttctgatcccctcttgcgtttattttataagttttccaccataaactgtattccctcgtgcaaagtttctctcctgttctcatcatagttccata 705  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  22415962 attgtttctgatcccctcttgcgtttattttatgagttttccaccattaactgtattccctcttgcaaagttgctctcctgttctcatcatagttccata 22415863  T
Q  706 tatggtgctttaccaatgcttcttttaagctcattcagtcttttatccccatcatcaataatttcctagtatgaaaaatgcatatatctaagtgcaagca 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22415862 tatggtgctttaccaatgcttcttttaagctcattcagtcttttatccccatcatcaataatttcctagtatgaaaaatgcatatatctaagtgcaagca 22415763  T
Q  806 ctaaaagtttaaaactgaatttcaaaccgtttaacaaatatttacattagaaataaatttgacacaaaagtattgtgtttgtataaaaggaagataagtt 905  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22415762 ctaaaagtttaaaactgaatttcaaaccgttttacaaatatttacattagaaataaa-ttgacacaaaagtattgtgtttgtataaaaggaagataagtt 22415664  T
Q  906 aaataaaaacatactctcgtttcacca 932  Q
    ||||||||||| |||||||||||||||    
T  22415663 aaataaaaacacactctcgtttcacca 22415637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 6686491 - 6686531
Alignment:
Q  308 acgcggaaaatccttgaggacagtgcgttcagcacgtctca 348  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  6686491 acgcggaaaatccttaaggacagtgcgatcagcacgtctca 6686531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 8e-67; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 44312949 - 44313098
Alignment:
Q  9 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgcccaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44312949 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgctcaa 44313048  T
Q  109 cgg-ttgtttttggaaatggcctatataaattgttttgaggagcacatat 157  Q
    ||| ||||| |||||||||||||||||||||||||| |||||||||||||    
T  44313049 cggtttgttattggaaatggcctatataaattgtttggaggagcacatat 44313098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 44316754 - 44316903
Alignment:
Q  9 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgcccaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44316754 tataacgtgcacaataaattagttttactagtatccctattttaatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgctcaa 44316853  T
Q  109 cgg-ttgtttttggaaatggcctatataaattgttttgaggagcacatat 157  Q
    ||| ||||| |||||||||||||||||||||||||| |||||||||||||    
T  44316854 cggtttgttattggaaatggcctatataaattgtttggaggagcacatat 44316903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 44317001 - 44317116
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44317001 ttgtcagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 44317100  T
Q  341 acgtctcaaatctttc 356  Q
    |||||||| |||||||    
T  44317101 acgtctcagatctttc 44317116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 44313196 - 44313304
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44313196 ttgtcagttctgaatcctcggcttgccgggaagggtctattatat-------gggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 44313288  T
Q  341 acgtctcaaatctttc 356  Q
    |||||||| |||||||    
T  44313289 acgtctcagatctttc 44313304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 9339391 - 9339290
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| |||||||||||||||  ||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||  |||||||| ||    
T  9339391 ttgtcagttctgaatcctcgatttgtcggaaagggtctgttaaatcttggaagggttagcgttttacacgcggaaaatctttgaggaatgtgcgttccgc 9339292  T
Q  341 ac 342  Q
    ||    
T  9339291 ac 9339290  T

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Target: scaffold0200 (Bit Score: 123; Significance: 1e-62; HSPs: 2)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 29221 - 29375
Alignment:
Q  9 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgcccaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  29221 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgctcag 29320  T
Q  109 c-ggttgtttttggaaatggcctatataaattgttttgaggagcacatatgaaaa 162  Q
    | | ||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  29321 cagtttgttattggaaatggcctatataaattgtttggaggagcacatattaaaa 29375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 29468 - 29583
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29468 ttgtcagttctgaatcctcggtttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgtccagc 29567  T
Q  341 acgtctcaaatctttc 356  Q
    |||||||| |||||||    
T  29568 acgtctcagatctttc 29583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 1e-62; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 34099950 - 34099796
Alignment:
Q  9 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgcccaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  34099950 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgctcag 34099851  T
Q  109 c-ggttgtttttggaaatggcctatataaattgttttgaggagcacatatgaaaa 162  Q
    | | ||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  34099850 cagtttgttattggaaatggcctatataaattgtttggaggagcacatattaaaa 34099796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 34096317 - 34096163
Alignment:
Q  9 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgcccaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||     
T  34096317 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgctgagtatgtgtacatcccacgttttattatgctcag 34096218  T
Q  109 c-ggttgtttttggaaatggcctatataaattgttttgaggagcacatatgaaaa 162  Q
    | | ||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  34096217 cagtttgttattggaaatggcctatataaattgtttggaggagcacatattaaaa 34096163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 34099703 - 34099588
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34099703 ttgtcagttctgaatcctcggtttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 34099604  T
Q  341 acgtctcaaatctttc 356  Q
    |||||||| |||||||    
T  34099603 acgtctcagatctttc 34099588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 34096069 - 34095954
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34096069 ttgtcagttctgaatcctcggtttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgtccagc 34095970  T
Q  341 acgtctcaaatctttc 356  Q
    |||||||| |||||||    
T  34095969 acgtctcagatctttc 34095954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 21611110 - 21610956
Alignment:
Q  9 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgcccaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  21611110 tataacgtgcacaataaattagttttactagtatccctatttttatgccaagaagtggcagtgccgagtatgtgtacatcccacgttttattatgctcag 21611011  T
Q  109 c-ggttgtttttggaaatggcctatataaattgttttgaggagcacatatgaaaa 162  Q
    | | ||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  21611010 cagtttgttattggaaatggcctatataaattgtttggaggagcacatattaaaa 21610956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 21610863 - 21610748
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21610863 ttgtcagttctgaatcctcggtttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgtccagc 21610764  T
Q  341 acgtctcaaatctttc 356  Q
    |||||||| |||||||    
T  21610763 acgtctcagatctttc 21610748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 19429882 - 19429939
Alignment:
Q  293 gggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagcacgtctcaaa 350  Q
    |||||||| || |||||||||||||||||||||||||| | | |||||||||||||||    
T  19429882 gggttagcattctacacgcggaaaatccttgaggacagcgtgatcagcacgtctcaaa 19429939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 100; Significance: 6e-49; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 37566 - 37451
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37566 ttgtcagttctgaatcctcggcttgccgggaagggtttgttatatcttggaagggttagcgttttacacgcggaaagtccttgaggacagtgcgttcagc 37467  T
Q  341 acgtctcaaatctttc 356  Q
    |||||||| |||||||    
T  37466 acgtctcagatctttc 37451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 41343 - 41228
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| ||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41343 ttgtcagttctgaatctttggcttgtcgggcagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggatagtgcgttcagc 41244  T
Q  341 acgtctcaaatctttc 356  Q
    |||||||| |||||||    
T  41243 acgtctcagatctttc 41228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 4e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 22067761 - 22067646
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22067761 ttgtcagttctgaatcttcggcttgtcgggaagggtctgttaaatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcattcagc 22067662  T
Q  341 acgtctcaaatctttc 356  Q
    |||||||| |||||||    
T  22067661 acgtctcagatctttc 22067646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 261 - 353
Target Start/End: Original strand, 22068151 - 22068243
Alignment:
Q  261 gcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagcacgtctcaaatct 353  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||    
T  22068151 gcttgtcgggaagggtctgttaaatcttgaaagggttagcgttttacacgcgaaaaatccttgaggacagtgcgttcaacacgtctcagatct 22068243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 4673495 - 4673383
Alignment:
Q  240 tttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcag 339  Q
    ||||| ||||||||||| |||||||  ||| |||||||||||| ||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||    
T  4673495 tttgtgagttctgaatcttcggcttatcggaaagggtctgttaaatcttggaaaggttagcgttt-acatgcggaaaatccttgaggacagtacgttcag 4673397  T
Q  340 cacgtctcaaatct 353  Q
    ||||||||| ||||    
T  4673396 cacgtctcagatct 4673383  T

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Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 21144266 - 21144154
Alignment:
Q  241 ttgttagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagc 340  Q
    |||| |||| |||||||| ||| ||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  21144266 ttgtcagttttgaatcctaggcatgccgagaagggtctgttatattttggaagggttagcgttctacacgcggaaaatccttgaggacagtgcgttcaac 21144167  T
Q  341 acgtctcaaatct 353  Q
    |||||||| ||||    
T  21144166 acgtctcagatct 21144154  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 21145399 - 21145486
Alignment:
Q  246 agttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgc 333  Q
    ||||||||||||||||||| || |||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  21145399 agttctgaatcctcggctttccaggaagggtctgttatatcttgggagggttagtgttctacacgcggaaaatccttgaggacagtgc 21145486  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 4167876 - 4167774
Alignment:
Q  245 tagttctgaatcctcggcttgccgggaagggtctgttatatcttggaagggttagcgttttacacgcggaaaatccttgaggacagtgcgttcagcacgt 344  Q
    |||||||||||| ||| ||||  |||||||||||||||  || |||  || |||||||| || | |||||||||| |||||||||||||| |||||||||    
T  4167876 tagttctgaatcttcgacttgttgggaagggtctgttaactcctggg-ggattagcgttctatatgcggaaaatctttgaggacagtgcgatcagcacgt 4167778  T
Q  345 ctca 348  Q
    ||||    
T  4167777 ctca 4167774  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 21144455 - 21144372
Alignment:
Q  74 gagtatgtgtacatcccacgttttattatgcccaacggttgtttttggaaatggcctatataa--attgttttgaggagcacata 156  Q
    ||||| ||||| ||||||||||| ||| ||| ||| ||||  ||||| |||| ||||||||||  ||||||||||||||||||||    
T  21144455 gagtacgtgtatatcccacgttt-attgtgctcaatggttaattttgaaaatagcctatataataattgttttgaggagcacata 21144372  T

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Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 3333731 - 3333671
Alignment:
Q  99 ttatgcccaacggtt-gtttttggaaatggcctatataaattgttttgaggagcacatatg 158  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3333731 ttatgctcaacggtttgtttttggaaatggcctatataaattgttttgaggagcacatatg 3333671  T

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