View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120R-Insertion-3 (Length: 351)
Name: NF2120R-Insertion-3
Description: NF2120R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120R-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 43 - 292
Target Start/End: Original strand, 37602653 - 37602897
Alignment:
| Q |
43 |
tttgatccctttgtaaagccatcttttttccatagataattcacaactttgttgctagagcacattcactaactctttaactactaaggatataattatt |
142 |
Q |
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| T |
37602653 |
tttgatccctttgtcaagccatcttctttccatagataactcacaactttgttgctaaagcacatttactaactccttaactactaaggatctaattatt |
37602752 |
T |
|
| Q |
143 |
gtgttaacttagttagggccattctaaagattgaaagatctccattgcttttcactgtgtccaccgtaatttccatataatagaagatggaaaaatcttc |
242 |
Q |
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| T |
37602753 |
gtgtt-actgtgttagggccattataaagatggaaagatctccattgttgttcactgtgtccacaataattttcatataataga----tgaaaaatcttt |
37602847 |
T |
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| Q |
243 |
gttgctttgcataagaagatggaaagatctccattgctttcatgttctat |
292 |
Q |
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|||||||| |||| ||||| ||||| |||||||| ||||||||||||||| |
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| T |
37602848 |
gttgctttacatatgaagaaggaaatatctccatcgctttcatgttctat |
37602897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 43 - 292
Target Start/End: Complemental strand, 46558340 - 46558096
Alignment:
| Q |
43 |
tttgatccctttgtaaagccatcttttttccatagataattcacaactttgttgctagagcacattcactaactctttaactactaaggatataattatt |
142 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
46558340 |
tttgatccctttgtcaagccatcttctttccatagataactcacaactttgttgctaaagcacatttactaactccttaactactaaggatctaattatt |
46558241 |
T |
|
| Q |
143 |
gtgttaacttagttagggccattctaaagattgaaagatctccattgcttttcactgtgtccaccgtaatttccatataatagaagatggaaaaatcttc |
242 |
Q |
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| T |
46558240 |
gtgtt-actgtgttagggccattataaagatggaaagatctccattgttgttcactgtgtccacaataattttcatataataga----tgaaaaatcttt |
46558146 |
T |
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| Q |
243 |
gttgctttgcataagaagatggaaagatctccattgctttcatgttctat |
292 |
Q |
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|||||||| |||| ||||| ||||| |||||||| ||||||||||||||| |
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| T |
46558145 |
gttgctttacatatgaagaaggaaatatctccatcgctttcatgttctat |
46558096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 39733424 - 39733368
Alignment:
| Q |
292 |
ttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttcttttt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39733424 |
ttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttcctttt |
39733368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 39839534 - 39839590
Alignment:
| Q |
292 |
ttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttcttttt |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39839534 |
ttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttcctttt |
39839590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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