View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120R-Insertion-4 (Length: 337)
Name: NF2120R-Insertion-4
Description: NF2120R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120R-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 17745129 - 17744801
Alignment:
| Q |
9 |
ggttcaccaatattagatgaaagatgcaagtcaataagctttgatatgaggctaaaaataccatcttgggaagctgctactaaacttgaagaacaagaaa |
108 |
Q |
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| T |
17745129 |
ggttcaccaatattagatgaaagatgcaagtcaataagctttgatatgagactaaaaataccatcttgggaagctgcttcaaaacttgaagaacaagaaa |
17745030 |
T |
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| Q |
109 |
ttgatttttctacaaattgnnnnnnnnnnnnnnnnnnnnttggaagtgatgcaagttcagatttatttgagattgaaagtttcactggtaataaaacaag |
208 |
Q |
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| T |
17745029 |
ttgatttttctacaaattgtgatgatgatgatgatgatgttggaagtgatgcaagttcagatttatttgagattgaaagcttcactggtaataaaacaag |
17744930 |
T |
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| Q |
209 |
ctcatttttatcaagaacaacaacatcacatgttgcttctggttgcactagtccaaatttttatgcaccaagtgaagcaagcattgaatggagtgtggta |
308 |
Q |
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| T |
17744929 |
ctcatttttatcaagaacaacaacatcacatgttgcttctggttgcactagtccaaatttttatgcaccaagtgaagcaagcattgaatggagtgtggta |
17744830 |
T |
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| Q |
309 |
actgcaagtgcagttgattattcagctgt |
337 |
Q |
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| T |
17744829 |
actgcaagtgcagttgattattcagctgt |
17744801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 24336875 - 24336907
Alignment:
| Q |
152 |
aagtgatgcaagttcagatttatttgagattga |
184 |
Q |
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| T |
24336875 |
aagtgatgcaagttcagatttatttgagattga |
24336907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 24337002 - 24337042
Alignment:
| Q |
279 |
agtgaagcaagcattgaatggagtgtggtaactgcaagtgc |
319 |
Q |
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| T |
24337002 |
agtgaggcaagcatagaatggagtgtggtaactgcaagtgc |
24337042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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