View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120R-Insertion-5 (Length: 316)
Name: NF2120R-Insertion-5
Description: NF2120R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120R-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 153 - 316
Target Start/End: Complemental strand, 31064822 - 31064657
Alignment:
| Q |
153 |
ccggtcaatcttcggtggctatattttcacgtgacttacaccaaatctaaaacttaaagttaataaatctcactgttcatattaatgaattagaaaaata |
252 |
Q |
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| T |
31064822 |
ccggtcaatcttcggtggctatattttcacgtgacttacaccaaatctaaaacttaaagttaataaatctcactgttcatattaatgaattagaaaaata |
31064723 |
T |
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| Q |
253 |
ttttcg--tttgtgtcctgtagcttgtgggatcaatctcacatgtatcttgtttcacatctctaca |
316 |
Q |
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| T |
31064722 |
ttttcgtttttgtgtcctgtagctcgtgggatcaatctcacctgtatcttgtttcacatctctaca |
31064657 |
T |
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Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 31064970 - 31064895
Alignment:
| Q |
9 |
cgaatccacccatgttccttttaatttcttgttagattatcactattcttcaagattaacttagagaaaccaacaa |
84 |
Q |
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| T |
31064970 |
cgaatccacccatgttccttttaatttcttgttagattatcactattcttcaagattaacttagagaaaccaacaa |
31064895 |
T |
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