View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2120R-Insertion-8 (Length: 282)

Name: NF2120R-Insertion-8
Description: NF2120R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2120R-Insertion-8
NF2120R-Insertion-8
[»] chr1 (3 HSPs)
chr1 (9-282)||(44128235-44128508)
chr1 (9-282)||(44132440-44132713)
chr1 (9-282)||(44140862-44141135)
[»] chr5 (9 HSPs)
chr5 (161-282)||(1504421-1504542)
chr5 (167-282)||(1491657-1491772)
chr5 (166-282)||(1477656-1477772)
chr5 (9-114)||(1504807-1504911)
chr5 (162-282)||(1481767-1481887)
chr5 (166-282)||(1485503-1485621)
chr5 (168-282)||(1496867-1496981)
chr5 (19-58)||(1482078-1482117)
chr5 (19-58)||(1477884-1477923)
[»] chr7 (11 HSPs)
chr7 (166-282)||(5290081-5290197)
chr7 (166-282)||(5302118-5302234)
chr7 (166-282)||(5309755-5309871)
chr7 (166-282)||(5283930-5284046)
chr7 (166-282)||(5314572-5314688)
chr7 (12-84)||(46707179-46707251)
chr7 (9-58)||(5310282-5310331)
chr7 (10-58)||(5284193-5284241)
chr7 (10-58)||(5314996-5315044)
chr7 (10-58)||(5289886-5289934)
chr7 (10-58)||(5302381-5302429)
[»] chr2 (2 HSPs)
chr2 (166-282)||(24165436-24165552)
chr2 (13-54)||(24163982-24164023)
[»] chr3 (3 HSPs)
chr3 (170-265)||(37863716-37863811)
chr3 (170-226)||(37859726-37859782)
chr3 (170-226)||(39029635-39029691)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 44128508 - 44128235
Alignment:
Q  9 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44128508 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44128409  T
Q  109 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128408 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44128309  T
Q  209 gtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcag 282  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128308 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcag 44128235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 44132713 - 44132440
Alignment:
Q  9 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44132713 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44132614  T
Q  109 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132613 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44132514  T
Q  209 gtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcag 282  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132513 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcag 44132440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 44141135 - 44140862
Alignment:
Q  9 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44141135 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44141036  T
Q  109 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141035 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44140936  T
Q  209 gtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcag 282  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140935 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcag 44140862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 161 - 282
Target Start/End: Complemental strand, 1504542 - 1504421
Alignment:
Q  161 gaaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttca 260  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1504542 gaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttca 1504443  T
Q  261 acacaattggctgggtttgcag 282  Q
    |||||||| | ||| |||||||    
T  1504442 acacaatttggtggatttgcag 1504421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 1491772 - 1491657
Alignment:
Q  167 atacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaa 266  Q
    |||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||     
T  1491772 atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacag 1491673  T
Q  267 ttggctgggtttgcag 282  Q
    || ||||| |||||||    
T  1491672 tttgctggatttgcag 1491657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 1477772 - 1477656
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    ||||||||||||||||||| ||||| ||||| ||||||   ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  1477772 aatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgctttgttcaacaca 1477673  T
Q  266 attggctgggtttgcag 282  Q
     |||||||| |||||||    
T  1477672 gttggctggatttgcag 1477656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 1504911 - 1504807
Alignment:
Q  9 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||| ||||    
T  1504911 ctctgttaggtacatgtatcttctcttaatcatagatttatcacctgaaggtaattatgaagagatgatattagttcaac-aaatttgggtgatacgaaa 1504813  T
Q  109 ccaatg 114  Q
     |||||    
T  1504812 tcaatg 1504807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 1481887 - 1481767
Alignment:
Q  162 aaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaa 261  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    || || ||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  1481887 aaaaagtacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaa 1481788  T
Q  262 cacaattggctgggtttgcag 282  Q
    |||| || ||||| |||||||    
T  1481787 cacagtttgctggatttgcag 1481767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 1485621 - 1485503
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagta--gaaatcaggatatgtgctttgttcaaca 263  Q
    |||||||||| ||||| || ||||||||| ||||||  |||||||| || ||||||| |||| | |||||  ||||||||||||||||||||||||||||    
T  1485621 aatacttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttcaaca 1485522  T
Q  264 caattggctgggtttgcag 282  Q
    ||||| | ||| |||||||    
T  1485521 caatttggtggatttgcag 1485503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 282
Target Start/End: Complemental strand, 1496981 - 1496867
Alignment:
Q  168 tacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaat 267  Q
    |||| ||| ||||| |||||||||| ||| | |||||||||||| ||| | ||||||| | | || |||| ||||||||||||||||||||||| |||||    
T  1496981 tactaacatatgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaatacaat 1496882  T
Q  268 tggctgggtttgcag 282  Q
    | | ||| |||||||    
T  1496881 ttgttggatttgcag 1496867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 1482117 - 1482078
Alignment:
Q  19 tacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  1482117 tacatgtatctcctcttgatcatagatttatcacctgaag 1482078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 1477923 - 1477884
Alignment:
Q  19 tacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  1477923 tacatgtatctcctcttgatcatggatttatcacctgaag 1477884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 5290081 - 5290197
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  5290081 aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacaca 5290180  T
Q  266 attggctgggtttgcag 282  Q
    ||| ||||| |||||||    
T  5290181 atttgctggatttgcag 5290197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 5302234 - 5302118
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  5302234 aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacaca 5302135  T
Q  266 attggctgggtttgcag 282  Q
    ||| ||||| |||||||    
T  5302134 atttgctggatttgcag 5302118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 5309871 - 5309755
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || |||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5309871 aatacttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacaca 5309772  T
Q  266 attggctgggtttgcag 282  Q
    ||| ||||| |||||||    
T  5309771 atttgctggatttgcag 5309755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 5284046 - 5283930
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  5284046 aatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagtaaaaatcaggatacgtgctttgttcaacaca 5283947  T
Q  266 attggctgggtttgcag 282  Q
    ||| ||||| |||||||    
T  5283946 atttgctggatttgcag 5283930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 5314688 - 5314572
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || ||||||||||||||||||   ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  5314688 aatacttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttcaacaca 5314589  T
Q  266 attggctgggtttgcag 282  Q
    ||| ||||| |||||||    
T  5314588 atttgctggatttgcag 5314572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 46707179 - 46707251
Alignment:
Q  12 tgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagtt 84  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||    
T  46707179 tgttaggtacatgtatctcctcttgatcatagatttatcacctgaaggtaattatgataggatgatattagtt 46707251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 5310331 - 5310282
Alignment:
Q  9 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5310331 ctctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5310282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 5284241 - 5284193
Alignment:
Q  10 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5284241 tctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5284193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 5315044 - 5314996
Alignment:
Q  10 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5315044 tctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5314996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 5289886 - 5289934
Alignment:
Q  10 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  5289886 tctgttagatacatgtatctcctcttgatcatggatttatcacctgaag 5289934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 5302429 - 5302381
Alignment:
Q  10 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  5302429 tctgttagatacatgtatctcctcttgatcatggatttatcacctgaag 5302381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 24165436 - 24165552
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||| |||||||| ||||| ||||||||||   ||||||| || || ||||||| | |||||||||||||||||||||||||||||||||||||    
T  24165436 aatacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacaca 24165535  T
Q  266 attggctgggtttgcag 282  Q
     || | ||| |||||||    
T  24165536 gtttggtggatttgcag 24165552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 24163982 - 24164023
Alignment:
Q  13 gttaggtacatatatctcctcttgatcatagatttatcacct 54  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  24163982 gttaggtacatgtatctcctcttgatcatagttttatcacct 24164023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 37863716 - 37863811
Alignment:
Q  170 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||| |||||||| ||| |||||||||| ||||||||||| ||||||||    ||||| || ||||||||||| || || ||||||||    
T  37863716 cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacaca 37863811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
Q  170 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgat 226  Q
    |||||||||||| || ||||| |||||||| |||||||| |||||||| ||||||||    
T  37859726 cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat 37859782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 39029691 - 39029635
Alignment:
Q  170 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgat 226  Q
    |||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||    
T  39029691 cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat 39029635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University