View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120_high_3 (Length: 406)
Name: NF2120_high_3
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 18735902 - 18736255
Alignment:
| Q |
11 |
cataggaacctaaccatattctctggcggctgtttggcagcctgatttccgaaacatatttcccccactttctcttccttactcctctatacattgaaga |
110 |
Q |
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| T |
18735902 |
cataggaacctaaccatattctctggcggctgtttggcagcctgatttctgacacatatttcccccactttctcttccttactcctctatacaatgaaga |
18736001 |
T |
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| Q |
111 |
atcacttctttccaccgcagttttttccatattcgatttcaccatatttactttttagggtataagaaaataagtacacaaacacttcaagtagaaaatt |
210 |
Q |
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| T |
18736002 |
atcacttctttccaccgcaattttttccatattcgatttcaccatatttactctttagggtataagaaaataagtacacaaacacttcaagttgaaaatt |
18736101 |
T |
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| Q |
211 |
aaagttgttttttcaaggttgaacctgatctatattgttgtcctatgatgttttggctatgtttgagtttatgagttgagtaagaagagttttgcggctg |
310 |
Q |
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| T |
18736102 |
aaagttgttttttcaaggttgaacctgatctatgttcttgtcctatgatgttttggctgtgtttgagtttatgagttgagtgagaagagttttgcggctg |
18736201 |
T |
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| Q |
311 |
aatatatatagtgaatctagtgaagaaatctgagtaattgtgaagagtcaacgc |
364 |
Q |
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| T |
18736202 |
aatatatatagtgaaactagtgaagaaatttgagtaattgtgaagagtcaacgc |
18736255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 18730568 - 18730749
Alignment:
| Q |
16 |
gaacctaaccatattctctggcggctgtttggcagcctgatttccgaaacatatttcccccactttctcttccttactcctctatacattgaagaatcac |
115 |
Q |
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| T |
18730568 |
gaacctaaccatattctttggcggctgtttggtagtctgatttcagacacatactttccccacttcctcttccttactcctctatacattgaagaatcac |
18730667 |
T |
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| Q |
116 |
ttctttccaccgcagttttttccatattcgatttcaccatatttactttttagggtataagaaaataagtacacaaacactt |
197 |
Q |
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| T |
18730668 |
ttctttccgcagcagttttttctacatttgatttcaccatatttactctttaggatataagaaaataattacacaaacactt |
18730749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 18733338 - 18733481
Alignment:
| Q |
16 |
gaacctaaccatattctctggcggctgtttggcagcctgatttccgaaacatatttcccccactttctcttccttactcctctatacattgaagaatcac |
115 |
Q |
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| T |
18733338 |
gaacctaaccatattctttggcggctgtttggtagtctgatttcagacacatactttccccatttcctcttccttactcctctatacaatgaagaatcac |
18733437 |
T |
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| Q |
116 |
ttctttccaccgcagttttttccatattcgatttcaccatattt |
159 |
Q |
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||| |||||||||||||||||||| ||| ||||||||||||||| |
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| T |
18733438 |
ttcgttccaccgcagttttttccacatttgatttcaccatattt |
18733481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 18743361 - 18743505
Alignment:
| Q |
11 |
cataggaacctaaccatattctctggcggctgtttggcagcctgatttccgaaacatatttcccccactttctcttccttactcctctatacattgaaga |
110 |
Q |
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|||| |||||||||||||||||||| ||||||||||| | || || ||||| ||||||||||||||||| ||||||| |||||| | |||| ||| || |
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| T |
18743361 |
cataagaacctaaccatattctctgacggctgtttggtaatctaatctccgacacatatttcccccacttcctcttccgtactccacggtacaatgatga |
18743460 |
T |
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| Q |
111 |
atcacttctttccaccgcagttttttccatattcgatttcaccat |
155 |
Q |
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|||||||| ||| || || |||||||| |||||| |||||||| |
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| T |
18743461 |
atcacttcgttctgtcgtaggtttttccacattcgacttcaccat |
18743505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 505642 - 505675
Alignment:
| Q |
68 |
atttcccccactttctcttccttactcctctata |
101 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
505642 |
atttcccccaatttctcttccttactcctctata |
505675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 3573815 - 3573730
Alignment:
| Q |
19 |
cctaaccatattctctggcggctgtttggcagcctgatttccgaaacatatttcccccactttctcttccttactcctctatacat |
104 |
Q |
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|||||||||||||||| || || ||||| ||||| ||||| || || |||| ||||| ||||||||||| || ||||||||||| |
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| T |
3573815 |
cctaaccatattctctcacgactatttggaagcctaatttcagatacccattttccccattttctcttcctcacccctctatacat |
3573730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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