View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120_high_6 (Length: 389)
Name: NF2120_high_6
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 41706517 - 41706129
Alignment:
| Q |
1 |
ccaccgttcatcaacatcaaacaccccactctctctttcctcctcactccatctccaccgtccataaattcgtaaaaataattcttcctaggcaacacca |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706517 |
ccaccgttcataaacatcaaacaccccactctctctttcctcctcactccatctccaccgtccataaattcgtaaaaataattcttcctaggcaacacca |
41706418 |
T |
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| Q |
101 |
cactcgaattcatcccaacaaaacgcaacgtcaccgccggcactatcgccgccgtgttcaaataataacatggtgaaagcccagttttctgttcaatctc |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706417 |
cactcgaattcatcccaacaaaacgcagcgtcaccgccggcactatcgccgccgtgttcaaataataacatggtgaaagcccagttttctgttcaatctc |
41706318 |
T |
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| Q |
201 |
aggcgccctccggttagatttcctagcacgacggtcaaacccttccaccaccgagttataaaatttctccggtaacatcgtaaatgtcgtgccggaatcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706317 |
aggcgccctccggttagatttcctagcacgacggtcaaacccttccaccaccgagttataaaatttctccggtaacatcgtaaatgtcgtgccggaatcc |
41706218 |
T |
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| Q |
301 |
actactacaccgccgtcacctttcttattcaccctccgtaaaatctttggtgctggaacggtcttttttccgacagagattcctttcaa |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706217 |
actactacaccgccgtcacctttcttattcaccctccgtaaaatctttggtgctggaacggtcttttttccgacagagattcctttcaa |
41706129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 3743389 - 3743510
Alignment:
| Q |
2 |
caccgttcatcaacatcaaacaccccactctctctttcctcctcactccatctccaccgtccataaattcgtaaaaataattcttcctaggcaacaccac |
101 |
Q |
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|||||||||||||||||| |||||||||| || ||||||| || | ||||| |||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
3743389 |
caccgttcatcaacatcatacaccccactttccctttccttctaataccatcgccaccgtccataaactcatagaaataattcttcctaggcaacaccac |
3743488 |
T |
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| Q |
102 |
actcgaattcatcccaacaaaa |
123 |
Q |
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| T |
3743489 |
atcagaattattcccaacaaaa |
3743510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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