View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2120_low_1 (Length: 585)

Name: NF2120_low_1
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2120_low_1
NF2120_low_1
[»] chr3 (4 HSPs)
chr3 (1-386)||(34899335-34899719)
chr3 (427-585)||(34899137-34899294)
chr3 (555-583)||(7464482-7464510)
chr3 (555-583)||(51047160-51047188)
[»] chr8 (5 HSPs)
chr8 (555-585)||(12800891-12800921)
chr8 (555-585)||(19163527-19163557)
chr8 (555-585)||(24023699-24023729)
chr8 (555-583)||(10171561-10171589)
chr8 (557-585)||(24023408-24023436)
[»] chr7 (4 HSPs)
chr7 (555-585)||(145558-145588)
chr7 (556-585)||(19599185-19599214)
chr7 (555-583)||(18773747-18773775)
chr7 (555-583)||(27833392-27833420)
[»] chr5 (3 HSPs)
chr5 (555-585)||(13864384-13864414)
chr5 (553-585)||(32200436-32200468)
chr5 (557-585)||(40837896-40837924)
[»] chr4 (4 HSPs)
chr4 (555-585)||(9946467-9946497)
chr4 (555-585)||(11949754-11949784)
chr4 (555-585)||(19479468-19479498)
chr4 (555-585)||(21114296-21114326)
[»] chr2 (3 HSPs)
chr2 (555-585)||(31815878-31815908)
chr2 (557-585)||(4180737-4180765)
chr2 (557-585)||(8781643-8781671)
[»] chr1 (4 HSPs)
chr1 (555-585)||(8269359-8269389)
chr1 (555-584)||(17139508-17139537)
chr1 (557-585)||(2994798-2994826)
chr1 (557-585)||(12268977-12269005)
[»] chr6 (1 HSPs)
chr6 (557-585)||(34481407-34481435)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 34899719 - 34899335
Alignment:
Q  1 tatcttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtggaacatgtcaactgacccactaattgaggttctcctaataac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34899719 tatcttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaactgacccactagttgaggttctcctaataac 34899621  T
Q  101 taagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcatagannnn 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  34899620 taagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcatagatttt 34899521  T
Q  201 nnnngttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaatt 300  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899520 ttttgttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaatt 34899421  T
Q  301 agagaagtgtcaaaacaaaagggnnnnnnnnttcattgatgaattgtatagccctgatttttaaaattgagcaagactcttctgat 386  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34899420 agagaagtgtcaaaacaaaagggaaaaaaaattcattgatgaattgtatagccctgatttttagaattgagcaagactcttctgat 34899335  T

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Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 427 - 585
Target Start/End: Complemental strand, 34899294 - 34899137
Alignment:
Q  427 tactataataactagttttttacaaggttaaaataaacgtatctgtaaacttatgttgaaattttacaaatgtagagccattttatttttattaaacgat 526  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  34899294 tactataataaccagttttttacgaggttaaaataaacgtatctgtaaacttatgttgaaattttataaatgtagaaccattctatttttattaaacgat 34899195  T
Q  527 gttcggcaactatgtgannnnnnnnngttggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  34899194 gttcggcaactatgtga-ttttttttgttggtggtcggggtttgaaccccggaccttgc 34899137  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 555 - 583
Target Start/End: Original strand, 7464482 - 7464510
Alignment:
Q  555 tggtggtcggggtttgaaccccggacctt 583  Q
    |||||||||||||||||||||||||||||    
T  7464482 tggtggtcggggtttgaaccccggacctt 7464510  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 555 - 583
Target Start/End: Original strand, 51047160 - 51047188
Alignment:
Q  555 tggtggtcggggtttgaaccccggacctt 583  Q
    |||||||||||||||||||||||||||||    
T  51047160 tggtggtcggggtttgaaccccggacctt 51047188  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Original strand, 12800891 - 12800921
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  12800891 tggtggtcggggtttgaaccccggaccttgc 12800921  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Original strand, 19163527 - 19163557
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  19163527 tggtggtcggggtttgaaccccggaccttgc 19163557  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Original strand, 24023699 - 24023729
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  24023699 tggtggtcggggtttgaaccccggaccttgc 24023729  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 555 - 583
Target Start/End: Original strand, 10171561 - 10171589
Alignment:
Q  555 tggtggtcggggtttgaaccccggacctt 583  Q
    |||||||||||||||||||||||||||||    
T  10171561 tggtggtcggggtttgaaccccggacctt 10171589  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 557 - 585
Target Start/End: Original strand, 24023408 - 24023436
Alignment:
Q  557 gtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||    
T  24023408 gtggtcggggtttgaaccccggaccttgc 24023436  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Complemental strand, 145588 - 145558
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  145588 tggtggtcggggtttgaaccccggaccttgc 145558  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 585
Target Start/End: Complemental strand, 19599214 - 19599185
Alignment:
Q  556 ggtggtcggggtttgaaccccggaccttgc 585  Q
    ||||||||||||||||||||||||||||||    
T  19599214 ggtggtcggggtttgaaccccggaccttgc 19599185  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 555 - 583
Target Start/End: Original strand, 18773747 - 18773775
Alignment:
Q  555 tggtggtcggggtttgaaccccggacctt 583  Q
    |||||||||||||||||||||||||||||    
T  18773747 tggtggtcggggtttgaaccccggacctt 18773775  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 555 - 583
Target Start/End: Original strand, 27833392 - 27833420
Alignment:
Q  555 tggtggtcggggtttgaaccccggacctt 583  Q
    |||||||||||||||||||||||||||||    
T  27833392 tggtggtcggggtttgaaccccggacctt 27833420  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Complemental strand, 13864414 - 13864384
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  13864414 tggtggtcggggtttgaaccccggaccttgc 13864384  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 553 - 585
Target Start/End: Original strand, 32200436 - 32200468
Alignment:
Q  553 gttggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||| ||||||||||||||||||    
T  32200436 gttggtggtcggggcttgaaccccggaccttgc 32200468  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 557 - 585
Target Start/End: Original strand, 40837896 - 40837924
Alignment:
Q  557 gtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||    
T  40837896 gtggtcggggtttgaaccccggaccttgc 40837924  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Complemental strand, 9946497 - 9946467
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  9946497 tggtggtcggggtttgaaccccggaccttgc 9946467  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Original strand, 11949754 - 11949784
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  11949754 tggtggtcggggtttgaaccccggaccttgc 11949784  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Original strand, 19479468 - 19479498
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  19479468 tggtggtcggggtttgaaccccggaccttgc 19479498  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Original strand, 21114296 - 21114326
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  21114296 tggtggtcggggtttgaaccccggaccttgc 21114326  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Original strand, 31815878 - 31815908
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  31815878 tggtggtcggggtttgaaccccggaccttgc 31815908  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 557 - 585
Target Start/End: Complemental strand, 4180765 - 4180737
Alignment:
Q  557 gtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||    
T  4180765 gtggtcggggtttgaaccccggaccttgc 4180737  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 557 - 585
Target Start/End: Original strand, 8781643 - 8781671
Alignment:
Q  557 gtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||    
T  8781643 gtggtcggggtttgaaccccggaccttgc 8781671  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 585
Target Start/End: Original strand, 8269359 - 8269389
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||||    
T  8269359 tggtggtcggggtttgaaccccggaccttgc 8269389  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 584
Target Start/End: Original strand, 17139508 - 17139537
Alignment:
Q  555 tggtggtcggggtttgaaccccggaccttg 584  Q
    ||||||||||||||||||||||||||||||    
T  17139508 tggtggtcggggtttgaaccccggaccttg 17139537  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 557 - 585
Target Start/End: Complemental strand, 2994826 - 2994798
Alignment:
Q  557 gtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||    
T  2994826 gtggtcggggtttgaaccccggaccttgc 2994798  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 557 - 585
Target Start/End: Original strand, 12268977 - 12269005
Alignment:
Q  557 gtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||    
T  12268977 gtggtcggggtttgaaccccggaccttgc 12269005  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 557 - 585
Target Start/End: Original strand, 34481407 - 34481435
Alignment:
Q  557 gtggtcggggtttgaaccccggaccttgc 585  Q
    |||||||||||||||||||||||||||||    
T  34481407 gtggtcggggtttgaaccccggaccttgc 34481435  T

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